Strong signatures of selection in the domestic pig genome von Rubin, Carl-Johan, Megens, Hendrik-Jan, Barrio, Alvaro Martinez, Maqbool, Khurram, Sayyab, Shumaila, Schwochow, Doreen, Wang, Chao, Carlborg, Örjan, Jern, Patric, Jørgensen, Claus B, Archibald, Alan L, Fredholm, Merete, Groenen, Martien A. M, Andersson, Leif

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Regions of homozygosity in the porcine genome: consequence of demography and the recombination landscape von Bosse, Mirte, Megens, Hendrik-Jan, Madsen, Ole, Paudel, Yogesh, Frantz, Laurent A F, Schook, Lawrence B, Crooijmans, Richard P M A, Groenen, Martien A M

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Genome-wide footprints of pig domestication and selection revealed through massive parallel sequencing of pooled DNA von Amaral, Andreia J, Ferretti, Luca, Megens, Hendrik-Jan, Crooijmans, Richard P M A, Nie, Haisheng, Ramos-Onsins, Sebastian E, Perez-Enciso, Miguel, Schook, Lawrence B, Groenen, Martien A M

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A 12 kb multi-allelic copy number variation encompassing a GC gene enhancer is associated with mastitis resistance in dairy cattle von Lee, Young-Lim, Takeda, Haruko, Moreira, Gabriel Costa Monteiro, Karim, Latifa, Mullaart, Erik, Coppieters, Wouter, Appeltant, Ruth, Veerkamp, Roel F., Groenen, Martien A. M., Georges, Michel, Bosse, Mirte, Druet, Tom, Bouwman, Aniek C., Charlier, Carole

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A high density recombination map of the pig reveals a correlation between sex-specific recombination and GC content von Tortereau, Flavie, Servin, Bertrand, Frantz, Laurent, Megens, Hendrik-Jan, Milan, Denis, Rohrer, Gary, Wiedmann, Ralph, Beever, Jonathan, Archibald, Alan L, Schook, Lawrence B, Groenen, Martien A M

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Loss of function mutations in essential genes cause embryonic lethality in pigs von Derks, Martijn F L, Gjuvsland, Arne B, Bosse, Mirte, Lopes, Marcos S, van Son, Maren, Harlizius, Barbara, Tan, Beatrice F, Hamland, Hanne, Grindflek, Eli, Groenen, Martien A M, Megens, Hendrik-Jan

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Organoids: a promising new in vitro platform in livestock and veterinary research von Kar, Soumya K., Wells, Jerry M., Ellen, Esther D., te Pas, Marinus F. W., Madsen, Ole, Groenen, Martien A. M., Woelders, Henri

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development and characterization of a 60K SNP chip for chicken von Groenen, Martien A.M, Megens, Hendrik-Jan, Zare, Yalda, Warren, Wesley C, Hillier, LaDeana W, Crooijmans, Richard P.M.A, Vereijken, Addie, Okimoto, Ron, Muir, William M, Cheng, Hans H

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High-resolution structural variants catalogue in a large-scale whole genome sequenced bovine family cohort data von Lee, Young-Lim, Bosse, Mirte, Takeda, Haruko, Moreira, Gabriel Costa Monteiro, Karim, Latifa, Druet, Tom, Oget-Ebrad, Claire, Coppieters, Wouter, Veerkamp, Roel F, Groenen, Martien A M, Georges, Michel, Bouwman, Aniek C, Charlier, Carole

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Integrative QTL mapping and selection signatures in Groningen White Headed cattle inferred from whole-genome sequences von Gonzalez-Prendes, Rayner, Ginja, Catarina, Kantanen, Juha, Ghanem, Nasser, Kugonza, Donald R, Makgahlela, Mahlako L, Groenen, Martien A. M, Crooijmans, Richard P. M. A

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Balancing selection on a recessive lethal deletion with pleiotropic effects on two neighboring genes in the porcine genome von Derks, Martijn F L, Lopes, Marcos S, Bosse, Mirte, Madsen, Ole, Dibbits, Bert, Harlizius, Barbara, Groenen, Martien A M, Megens, Hendrik-Jan

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A fully automated image analysis method to quantify lung fibrosis in the bleomycin-induced rat model von Seger, Shanon, Stritt, Manuel, Vezzali, Enrico, Nayler, Oliver, Hess, Patrick, Groenen, Peter M A, Stalder, Anna K

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Prioritizing sequence variants in conserved non-coding elements in the chicken genome using chCADD von Gross, Christian, Bortoluzzi, Chiara, de Ridder, Dick, Megens, Hendrik-Jan, Groenen, Martien A. M., Reinders, Marcel, Bosse, Mirte

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Evolutionary dynamics of copy number variation in pig genomes in the context of adaptation and domestication von Paudel, Yogesh, Madsen, Ole, Megens, Hendrik-Jan, Frantz, Laurent A F, Bosse, Mirte, Bastiaansen, John W M, Crooijmans, Richard P M A, Groenen, Martien A M

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Exploring the unmapped DNA and RNA reads in a songbird genome von Laine, Veronika N, Gossmann, Toni I, van Oers, Kees, Visser, Marcel E, Groenen, Martien A M

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Genomic analysis on pygmy hog reveals extensive interbreeding during wild boar expansion von Liu, Langqing, Bosse, Mirte, Megens, Hendrik-Jan, Frantz, Laurent A. F., Lee, Young-Lim, Irving-Pease, Evan K., Narayan, Goutam, Groenen, Martien A. M., Madsen, Ole

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Genetic origin, admixture and population history of aurochs (Bos primigenius) and primitive European cattle von Upadhyay, M R, Chen, W, Lenstra, J A, Goderie, C R J, MacHugh, D E, Park, S D E, Magee, D A, Matassino, D, Ciani, F, Megens, H-J, van Arendonk, J A M, Groenen, M A M

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Genome-wide association analysis of adaptation to oxygen stress in Nile tilapia (Oreochromis niloticus) von Yu, Xiaofei, Megens, Hendrik-Jan, Mengistu, Samuel Bekele, Bastiaansen, John W. M., Mulder, Han A., Benzie, John A. H., Groenen, Martien A. M., Komen, Hans

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A systematic survey to identify lethal recessive variation in highly managed pig populations von Derks, Martijn F L, Megens, Hendrik-Jan, Bosse, Mirte, Lopes, Marcos S, Harlizius, Barbara, Groenen, Martien A M

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Signatures of selection in the genomes of commercial and non-commercial chicken breeds von Elferink, Martin G, Megens, Hendrik-Jan, Vereijken, Addie, Hu, Xiaoxiang, Crooijmans, Richard P M A, Groenen, Martien A M

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