Single-Cell Genomic Characterization Reveals the Cellular Reprogramming of the Gastric Tumor Microenvironment von Sathe, Anuja, Grimes, Susan M., Lau, Billy T., Chen, Jiamin, Suarez, Carlos, Huang, Robert J., Poultsides, George, Ji, Hanlee P.

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Single-cell analysis can define distinct evolution of tumor sites in follicular lymphoma von Haebe, Sarah, Shree, Tanaya, Sathe, Anuja, Day, Grady, Czerwinski, Debra K., Grimes, Susan M., Lee, HoJoon, Binkley, Michael S., Long, Steven R., Martin, Brock, Ji, Hanlee P., Levy, Ronald

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Colorectal Cancer Metastases in the Liver Establish Immunosuppressive Spatial Networking between Tumor-Associated SPP1+ Macrophages and Fibroblasts von Sathe, Anuja, Mason, Kaishu, Grimes, Susan M, Zhou, Zilu, Lau, Billy T, Bai, Xiangqi, Su, Andrew, Tan, Xiao, Lee, HoJoon, Suarez, Carlos J, Nguyen, Quan, Poultsides, George, Zhang, Nancy R, Ji, Hanlee P

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Direct measurement of engineered cancer mutations and their transcriptional phenotypes in single cells von Kim, Heon Seok, Grimes, Susan M., Chen, Tianqi, Sathe, Anuja, Lau, Billy T., Hwang, Gue-Ho, Bae, Sangsu, Ji, Hanlee P.

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Single-cell RNA-Seq of follicular lymphoma reveals malignant B-cell types and coexpression of T-cell immune checkpoints von Andor, Noemi, Simonds, Erin F., Czerwinski, Debra K., Chen, Jiamin, Grimes, Susan M., Wood-Bouwens, Christina, Zheng, Grace X.Y., Kubit, Matthew A., Greer, Stephanie, Weiss, William A., Levy, Ronald, Ji, Hanlee P.

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Single-cell characterization of CRISPR-modified transcript isoforms with nanopore sequencing von Kim, Heon Seok, Grimes, Susan M., Hooker, Anna C., Lau, Billy T., Ji, Hanlee P.

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Integrative single-cell analysis of allele-specific copy number alterations and chromatin accessibility in cancer von Wu, Chi-Yun, Lau, Billy T., Kim, Heon Seok, Sathe, Anuja, Grimes, Susan M., Ji, Hanlee P., Zhang, Nancy R.

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The Cancer Genome Atlas Clinical Explorer: a web and mobile interface for identifying clinical-genomic driver associations von Lee, HoJoon, Palm, Jennifer, Grimes, Susan M, Ji, Hanlee P

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Single-molecule methylation profiles of cell-free DNA in cancer with nanopore sequencing von Lau, Billy T, Almeda, Alison, Schauer, Marie, McNamara, Madeline, Bai, Xiangqi, Meng, Qingxi, Partha, Mira, Grimes, Susan M, Lee, HoJoon, Heestand, Gregory M, Ji, Hanlee P

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CRISPR–Cas9-targeted fragmentation and selective sequencing enable massively parallel microsatellite analysis von Shin, GiWon, Grimes, Susan M., Lee, HoJoon, Lau, Billy T., Xia, Li C., Ji, Hanlee P.

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GITR and TIGIT immunotherapy provokes divergent multicellular responses in the tumor microenvironment of gastrointestinal cancers von Sathe, Anuja, Ayala, Carlos, Bai, Xiangqi, Grimes, Susan M, Lee, Byrne, Kin, Cindy, Shelton, Andrew, Poultsides, George, Ji, Hanlee P

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KmerKeys: a web resource for searching indexed genome assemblies and variants von Pavlichin, Dmitri S, Lee, HoJoon, Greer, Stephanie U, Grimes, Susan M, Weissman, Tsachy, Ji, Hanlee P

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Single-cell transcriptome analysis identifies distinct cell types and niche signaling in a primary gastric organoid model von Chen, Jiamin, Lau, Billy T., Andor, Noemi, Grimes, Susan M., Handy, Christine, Wood-Bouwens, Christina, Ji, Hanlee P.

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Profiling diverse sequence tandem repeats in colorectal cancer reveals co-occurrence of microsatellite and chromosomal instability involving Chromosome 8 von Shin, Giwon, Greer, Stephanie U., Hopmans, Erik, Grimes, Susan M., Lee, Hojoon, Zhao, Lan, Miotke, Laura, Suarez, Carlos, Almeda, Alison F., Haraldsdottir, Sigurdis, Ji, Hanlee P.

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Non-disclosing students with disabilities or learning challenges : characteristics and size of a hidden population von Grimes, Susan, Scevak, Jill, Southgate, Erica, Buchanan, Rachel

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MendeLIMS: a web-based laboratory information management system for clinical genome sequencing von Grimes, Susan M, Ji, Hanlee P

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The Gastric Cancer Registry: A Genomic Translational Resource for Multidisciplinary Research in Gastric Cancer von Almeda, Alison F, Grimes, Susan M, Lee, HoJoon, Greer, Stephanie, Shin, GiWon, McNamara, Madeline, Hooker, Anna C, Arce, Maya M, Kubit, Matthew, Schauer, Marie C, Van Hummelen, Paul, Ma, Cindy, Mills, Meredith A, Huang, Robert J, Hwang, Joo Ha, Amieva, Manuel R, Han, Summer S, Ford, James M, Ji, Hanlee P

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Joint single cell DNA-seq and RNA-seq of gastric cancer cell lines reveals rules of in vitro evolution von Andor, Noemi, Lau, Billy T, Catalanotti, Claudia, Sathe, Anuja, Kubit, Matthew, Chen, Jiamin, Blaj, Cristina, Cherry, Athena, Bangs, Charles D, Grimes, Susan M, Suarez, Carlos J, Ji, Hanlee P

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Whole genome analysis identifies the association of TP53 genomic deletions with lower survival in Stage III colorectal cancer von Xia, Li C., Van Hummelen, Paul, Kubit, Matthew, Lee, HoJoon, Bell, John M., Grimes, Susan M., Wood-Bouwens, Christina, Greer, Stephanie U., Barker, Tyler, Haslem, Derrick S., Ford, James M., Fulde, Gail, Ji, Hanlee P., Nadauld, Lincoln D.

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A genome-wide approach for detecting novel insertion-deletion variants of mid-range size von Xia, Li C, Sakshuwong, Sukolsak, Hopmans, Erik S, Bell, John M, Grimes, Susan M, Siegmund, David O, Ji, Hanlee P, Zhang, Nancy R

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