Evolutionary dynamics of the accessory genome of Listeria monocytogenes von den Bakker, Henk C, Desjardins, Christopher A, Griggs, Allison D, Peters, Joseph E, Zeng, Qiandong, Young, Sarah K, Kodira, Chinnappa D, Yandava, Chandri, Hepburn, Theresa A, Haas, Brian J, Birren, Bruce W, Wiedmann, Martin

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Emergence of epidemic multidrug-resistant Enterococcus faecium from animal and commensal strains von Lebreton, François, van Schaik, Willem, McGuire, Abigail Manson, Godfrey, Paul, Griggs, Allison, Mazumdar, Varun, Corander, Jukka, Cheng, Lu, Saif, Sakina, Young, Sarah, Zeng, Qiandong, Wortman, Jennifer, Birren, Bruce, Willems, Rob J L, Earl, Ashlee M, Gilmore, Michael S

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Freshwater sponges in the southeastern U.S. harbor unique microbiomes that are influenced by host and environmental factors von Keleher, Jacqueline G, Strope, Taylor A, Estrada, Noah E, Griggs Mathis, Allison M, Easson, Cole G, Fiore, Cara

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Evolution of invasion in a diverse set of Fusobacterium species von Manson McGuire, Abigail, Cochrane, Kyla, Griggs, Allison D, Haas, Brian J, Abeel, Thomas, Zeng, Qiandong, Nice, Justin B, MacDonald, Hanlon, Birren, Bruce W, Berger, Bryan W, Allen-Vercoe, Emma, Earl, Ashlee M

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Kinannote, a computer program to identify and classify members of the eukaryotic protein kinase superfamily von Goldberg, Jonathan M, Griggs, Allison D, Smith, Janet L, Haas, Brian J, Wortman, Jennifer R, Zeng, Qiandong

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Genetic relatedness analysis reveals the cotransmission of genetically related Plasmodium falciparum parasites in Thiès, Senegal von Wong, Wesley, Griggs, Allison D, Daniels, Rachel F, Schaffner, Stephen F, Ndiaye, Daouda, Bei, Amy K, Deme, Awa B, MacInnis, Bronwyn, Volkman, Sarah K, Hartl, Daniel L, Neafsey, Daniel E, Wirth, Dyann F

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Comparative genomics of vancomycin-resistant Staphylococcus aureus strains and their positions within the clade most commonly associated with Methicillin-resistant S. aureus hospit... von Kos, Veronica N, Desjardins, Christopher A, Griggs, Allison, Cerqueira, Gustavo, Van Tonder, Andries, Holden, Matthew T G, Godfrey, Paul, Palmer, Kelli L, Bodi, Kip, Mongodin, Emmanuel F, Wortman, Jennifer, Feldgarden, Michael, Lawley, Trevor, Gill, Steven R, Haas, Brian J, Birren, Bruce, Gilmore, Michael S

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Comparative genomics of recent Shiga toxin-producing Escherichia coli O104:H4: short-term evolution of an emerging pathogen von Grad, Yonatan H, Godfrey, Paul, Cerquiera, Gustavo C, Mariani-Kurkdjian, Patricia, Gouali, Malika, Bingen, Edouard, Shea, Terrence P, Haas, Brian J, Griggs, Allison, Young, Sarah, Zeng, Qiandong, Lipsitch, Marc, Waldor, Matthew K, Weill, François-Xavier, Wortman, Jennifer R, Hanage, William P

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Reply to Guy et al.: Support for a bottleneck in the 2011 Escherichia coli O104:H4 outbreak in Germany von Grad, Yonatan H, Lipsitch, Marc, Griggs, Allison D, Haas, Brian J, Shea, Terrance P, McCowan, Caryn, Montmayeur, Anna, FitzGerald, Michael, Wortman, Jennifer R, Krogfelt, Karen A, Bingen, Edouard, Weill, François-Xavier, Tietze, Erhard, Flieger, Antje, Lander, Eric S, Nusbaum, Chad, Birren, Bruce W, Hung, Deborah T, Hanage, William P

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Structure, function and diversity of the healthy human microbiome von Huttenhower, Curtis, Gevers, Dirk, Knight, Rob, Abubucker, Sahar, Badger, Jonathan H, Chinwalla, Asif T, Creasy, Heather H, Earl, Ashlee M, FitzGerald, Michael G, Fulton, Robert S, Giglio, Michelle G, Hallsworth-Pepin, Kymberlie, Lobos, Elizabeth A, Madupu, Ramana, Magrini, Vincent, Martin, John C, Mitreva, Makedonka, Muzny, Donna M, Sodergren, Erica J, Versalovic, James, Wollam, Aye M, Worley, Kim C, Wortman, Jennifer R, Young, Sarah K, Zeng, Qiandong, Aagaard, Kjersti M, Abolude, Olukemi O, Allen-Vercoe, Emma, Alm, Eric J, Alvarado, Lucia, Andersen, Gary L, Anderson, Scott, Appelbaum, Elizabeth, Arachchi, Harindra M, Armitage, Gary, Arze, Cesar A, Ayvaz, Tulin, Baker, Carl C, Begg, Lisa, Belachew, Tsegahiwot, Bhonagiri, Veena, Bihan, Monika, Blaser, Martin J, Bloom, Toby, Bonazzi, Vivien, Paul Brooks, J, Buck, Gregory A, Buhay, Christian J, Busam, Dana A, Campbell, Joseph L, et. al

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Comparative genomics of enterococci: variation in Enterococcus faecalis, clade structure in E. faecium, and defining characteristics of E. gallinarum and E. casseliflavus von Palmer, Kelli L, Godfrey, Paul, Griggs, Allison, Kos, Veronica N, Zucker, Jeremy, Desjardins, Christopher, Cerqueira, Gustavo, Gevers, Dirk, Walker, Suzanne, Wortman, Jennifer, Feldgarden, Michael, Haas, Brian, Birren, Bruce, Gilmore, Michael S

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Genetic relatedness analysis reveals the cotransmission of genetically related Plasmodium falciparum parasites in Thiès, Senegal von Wong, Wesley, Griggs, Allison D, Daniels, Rachel F, Schaffner, Stephen F, Ndiaye, Daouda, Bei, Amy K, Deme, Awa B, MacInnis, Bronwyn, Volkman, Sarah K, Hartl, Daniel L, Neafsey, Daniel E, Wirth, Dyann F

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Comparative Genomics of Recent Shiga Toxin-Producing Escherichia coli O104:H4: Short-Term Evolution of an Emerging Pathogen von Grad, Yonatan Hagai, Godfrey, Paul, Cerquiera, Gustavo C, Mariani-Kurkdjian, Patricia, Gouali, Malika, Bingen, Edouard, Shea, Terrence P, Haas, Brian J, Griggs, Allison, Young, Sarah, Zeng, Qiandong, Lipsitch, Marc, Waldor, Matthew K, Weill, François-Xavier, Wortman, Jennifer R, Hanage, William P

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Comparative Genomics of Vancomycin-Resistant Staphylococcus aureus Strains and Their Positions within the Clade Most Commonly Associated with Methicillin-Resistant S. aureus Hospit... von Desjardins, Christopher A, Griggs, Allison, Cerqueira, Gustavo, Van Tonder, Andries, Holden, Matthew T. G, Godfrey, Paul, Palmer, Kelli L, Bodi, Kip, Mongodin, Emmanuel F, Wortman, Jennifer, Feldgarden, Michael, Lawley, Trevor, Gill, Steven R, Haas, Brian J, Birren, Bruce, Kos, Veronica N, Gilmore, Michael S

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Evolutionary Dynamics of the Accessory Genome of Listeria monocytogenes. e67511 von Bakker, Henk Cden, Desjardins, Christopher A, Griggs, Allison D, Peters, Joseph E, Zeng, Qiandong, Young, Sarah K, Kodira, Chinnappa D, Yandava, Chandri, Hepburn, Theresa A, Haas, Brian J

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Comparative Genomics of Enterococci: Variation in Enterococcus faecalis , Clade Structure in E. faecium , and Defining Characteristics of italic toggle="yes">E /italic>.  italic to... von Kelli L. Palmer, Paul Godfrey, Allison Griggs, Veronica N. Kos, Jeremy Zucker, Christopher Desjardins, Gustavo Cerqueira, Dirk Gevers, Suzanne Walker, Jennifer Wortman, Michael Feldgarden, Brian Haas, Bruce Birren, Michael S. Gilmore

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Evolution of Invasion in a Diverse Set of italic toggle="yes">Fusobacterium /italic> Species von Abigail Manson McGuire, Kyla Cochrane, Allison D. Griggs, Brian J. Haas, Thomas Abeel, Qiandong Zeng, Justin B. Nice, Hanlon MacDonald, Bruce W. Birren, Bryan W. Berger, Emma Allen-Vercoe, Ashlee M. Earl

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High quality draft genome sequence of Segniliparus rugosus CDC 945T= (ATCC BAA-974T) von Earl, Ashlee M., Desjardins, Christopher A., Fitzgerald, Michael G., Arachchi, Harindra M., Zeng, Qiandong, Mehta, Teena, Griggs, Allison, Birren, Bruce W., Toney, Nadege C., Carr, Janice, Posey, James, Butler, W. Ray

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Additional file 2: of Genetic relatedness analysis reveals the cotransmission of genetically related Plasmodium falciparum parasites in Thiès, Senegal von Wong, Wesley, Griggs, Allison, Daniels, Rachel, Schaffner, Stephen, Ndiaye, Daouda, Bei, Amy, Deme, Awa, MacInnis, Bronwyn, Volkman, Sarah, Hartl, Daniel, Neafsey, Daniel, Dyann Wirth

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Additional file 1: of Genetic relatedness analysis reveals the cotransmission of genetically related Plasmodium falciparum parasites in Thiès, Senegal von Wong, Wesley, Griggs, Allison, Daniels, Rachel, Schaffner, Stephen, Ndiaye, Daouda, Bei, Amy, Deme, Awa, MacInnis, Bronwyn, Volkman, Sarah, Hartl, Daniel, Neafsey, Daniel, Dyann Wirth

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