Metabolic responses of the rooster after exogenous thyroid hormones von Kittok, R J, Greninger, T J, DeShazer, J A, Lowry, S R, Mather, F B

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A human coronavirus evolves antigenically to escape antibody immunity von Eguia, Rachel T, Crawford, Katharine H D, Stevens-Ayers, Terry, Kelnhofer-Millevolte, Laurel, Greninger, Alexander L, Englund, Janet A, Boeckh, Michael J, Bloom, Jesse D

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Performance Characteristics of the Abbott Architect SARS-CoV-2 IgG Assay and Seroprevalence in Boise, Idaho von Bryan, Andrew, Pepper, Gregory, Wener, Mark H, Fink, Susan L, Morishima, Chihiro, Chaudhary, Anu, Jerome, Keith R, Mathias, Patrick C, Greninger, Alexander L

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Comparative Performance of SARS-CoV-2 Detection Assays Using Seven Different Primer-Probe Sets and One Assay Kit von Nalla, Arun K, Casto, Amanda M, Huang, Meei-Li W, Perchetti, Garrett A, Sampoleo, Reigran, Shrestha, Lasata, Wei, Yulun, Zhu, Haiying, Jerome, Keith R, Greninger, Alexander L

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Covid-19 in Critically Ill Patients in the Seattle Region — Case Series von Bhatraju, Pavan K, Ghassemieh, Bijan J, Nichols, Michelle, Kim, Richard, Jerome, Keith R, Nalla, Arun K, Greninger, Alexander L, Pipavath, Sudhakar, Wurfel, Mark M, Evans, Laura, Kritek, Patricia A, West, T. Eoin, Luks, Andrew, Gerbino, Anthony, Dale, Chris R, Goldman, Jason D, O’Mahony, Shane, Mikacenic, Carmen

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Oral prodrug of remdesivir parent GS-441524 is efficacious against SARS-CoV-2 in ferrets von Cox, Robert M., Wolf, Josef D., Lieber, Carolin M., Sourimant, Julien, Lin, Michelle J., Babusis, Darius, DuPont, Venice, Chan, Julie, Barrett, Kim T., Lye, Diane, Kalla, Rao, Chun, Kwon, Mackman, Richard L., Ye, Chengjin, Cihlar, Tomas, Martinez-Sobrido, Luis, Greninger, Alexander L., Bilello, John P., Plemper, Richard K.

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De novo emergence of a remdesivir resistance mutation during treatment of persistent SARS-CoV-2 infection in an immunocompromised patient: a case report von Gandhi, Shiv, Klein, Jonathan, Robertson, Alexander J., Peña-Hernández, Mario A., Lin, Michelle J., Roychoudhury, Pavitra, Lu, Peiwen, Fournier, John, Ferguson, David, Mohamed Bakhash, Shah A. K., Catherine Muenker, M., Srivathsan, Ariktha, Wunder, Elsio A., Kerantzas, Nicholas, Wang, Wenshuai, Lindenbach, Brett, Pyle, Anna, Wilen, Craig B., Ogbuagu, Onyema, Greninger, Alexander L., Iwasaki, Akiko, Schulz, Wade L., Ko, Albert I.

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Direct RT-qPCR detection of SARS-CoV-2 RNA from patient nasopharyngeal swabs without an RNA extraction step von Bruce, Emily A, Huang, Meei-Li, Perchetti, Garrett A, Tighe, Scott, Laaguiby, Pheobe, Hoffman, Jessica J, Gerrard, Diana L, Nalla, Arun K, Wei, Yulun, Greninger, Alexander L, Diehl, Sean A, Shirley, David J, Leonard, Debra G B, Huston, Christopher D, Kirkpatrick, Beth D, Dragon, Julie A, Crothers, Jessica W, Jerome, Keith R, Botten, Jason W

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Unbiased Pandemic Pathogen Detection and the Federal Register von Greninger, Alexander L

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Comparison of Commercially Available and Laboratory-Developed Assays for In Vitro Detection of SARS-CoV-2 in Clinical Laboratories von Lieberman, Joshua A, Pepper, Gregory, Naccache, Samia N, Huang, Meei-Li, Jerome, Keith R, Greninger, Alexander L

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Neutralizing Antibodies Correlate with Protection from SARS-CoV-2 in Humans during a Fishery Vessel Outbreak with a High Attack Rate von Addetia, Amin, Crawford, Katharine H D, Dingens, Adam, Zhu, Haiying, Roychoudhury, Pavitra, Huang, Meei-Li, Jerome, Keith R, Bloom, Jesse D, Greninger, Alexander L

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Coast-to-Coast Spread of SARS-CoV-2 during the Early Epidemic in the United States von Fauver, Joseph R., Petrone, Mary E., Hodcroft, Emma B., Shioda, Kayoko, Ehrlich, Hanna Y., Watts, Alexander G., Vogels, Chantal B.F., Brito, Anderson F., Alpert, Tara, Muyombwe, Anthony, Razeq, Jafar, Downing, Randy, Cheemarla, Nagarjuna R., Wyllie, Anne L., Kalinich, Chaney C., Ott, Isabel M., Quick, Joshua, Loman, Nicholas J., Neugebauer, Karla M., Greninger, Alexander L., Jerome, Keith R., Roychoudhury, Pavitra, Xie, Hong, Shrestha, Lasata, Huang, Meei-Li, Pitzer, Virginia E., Iwasaki, Akiko, Omer, Saad B., Khan, Kamran, Bogoch, Isaac I., Martinello, Richard A., Foxman, Ellen F., Landry, Marie L., Neher, Richard A., Ko, Albert I., Grubaugh, Nathan D.

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Societal Implications of the Internet of Pathogens von Greninger, Alexander L

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Rapid adaptation to human protein kinase R by a unique genomic rearrangement in rhesus cytomegalovirus von Child, Stephanie J, Greninger, Alexander L, Geballe, Adam P

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Longitudinal TprK profiling of in vivo and in vitro-propagated Treponema pallidum subsp. pallidum reveals accumulation of antigenic variants in absence of immune pressure von Lin, Michelle J, Haynes, Austin M, Addetia, Amin, Lieberman, Nicole A P, Phung, Quynh, Xie, Hong, Nguyen, Tien V, Molini, Barbara J, Lukehart, Sheila A, Giacani, Lorenzo, Greninger, Alexander L

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VAPiD: a lightweight cross-platform viral annotation pipeline and identification tool to facilitate virus genome submissions to NCBI GenBank von Shean, Ryan C, Makhsous, Negar, Stoddard, Graham D, Lin, Michelle J, Greninger, Alexander L

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Detection of SARS-CoV-2 with SHERLOCK One-Pot Testing von Joung, Julia, Ladha, Alim, Saito, Makoto, Kim, Nam-Gyun, Woolley, Ann E, Segel, Michael, Barretto, Robert P.J, Ranu, Amardeep, Macrae, Rhiannon K, Faure, Guilhem, Ioannidi, Eleonora I, Krajeski, Rohan N, Bruneau, Robert, Huang, Meei-Li W, Yu, Xu G, Li, Jonathan Z, Walker, Bruce D, Hung, Deborah T, Greninger, Alexander L, Jerome, Keith R, Gootenberg, Jonathan S, Abudayyeh, Omar O, Zhang, Feng

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Comparative genomics and full-length Tprk profiling of Treponema pallidum subsp. pallidum reinfection von Addetia, Amin, Tantalo, Lauren C, Lin, Michelle J, Xie, Hong, Huang, Meei-Li, Marra, Christina M, Greninger, Alexander L

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Sensitive Recovery of Complete SARS-CoV-2 Genomes from Clinical Samples by Use of Swift Biosciences' SARS-CoV-2 Multiplex Amplicon Sequencing Panel von Addetia, Amin, Lin, Michelle J, Peddu, Vikas, Roychoudhury, Pavitra, Jerome, Keith R, Greninger, Alexander L

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SARS-CoV-2 breakthrough infections elicit potent, broad, and durable neutralizing antibody responses von Walls, Alexandra C., Sprouse, Kaitlin R., Bowen, John E., Joshi, Anshu, Franko, Nicholas, Navarro, Mary Jane, Stewart, Cameron, Cameroni, Elisabetta, McCallum, Matthew, Goecker, Erin A., Degli-Angeli, Emily J., Logue, Jenni, Greninger, Alex, Corti, Davide, Chu, Helen Y., Veesler, David

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