Knotted artifacts in predicted 3D RNA structures von Gren, Bartosz A, Antczak, Maciej, Zok, Tomasz, Sulkowska, Joanna I, Szachniuk, Marta

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Discovery of a trefoil knot in the RydC RNA: Challenging previous notions of RNA topology von Niemyska, Wanda, Mukherjee, Sunandan, Gren, Bartosz A., Niewieczerzal, Szymon, Bujnicki, Janusz M., Sulkowska, Joanna I.

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Conservation of knotted and slipknotted topology in transmembrane transporters von Zayats, Vasilina, Sikora, Maciej, Perlinska, Agata P, Stasiulewicz, Adam, Gren, Bartosz A, Sulkowska, Joanna I

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AlphaFold predicts novel human proteins with knots von Perlinska, Agata P., Niemyska, Wanda H., Gren, Bartosz A., Bukowicki, Marek, Nowakowski, Szymon, Rubach, Pawel, Sulkowska, Joanna I.

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AlphaKnot: server to analyze entanglement in structures predicted by AlphaFold methods von Niemyska, Wanda, Rubach, Pawel, Gren, Bartosz A, Nguyen, Mai Lan, Garstka, Wojciech, Bruno da Silva, Fernando, Rawdon, Eric J, Sulkowska, Joanna I

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Topoly: Python package to analyze topology of polymers von Dabrowski-Tumanski, Pawel, Rubach, Pawel, Niemyska, Wanda, Gren, Bartosz Ambrozy, Sulkowska, Joanna Ida

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Lasso Proteins-Unifying Cysteine Knots and Miniproteins von Greń, Bartosz Ambroży, Dabrowski-Tumanski, Pawel, Niemyska, Wanda, Sulkowska, Joanna Ida

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Towards understanding the E. coli PNP binding mechanism and FRET absence between E. coli PNP and formycin A von Prokopowicz, Małgorzata, Greń, Bartosz, Cieśla, Joanna, Kierdaszuk, Borys

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Dynamical behavior of a dangling bond dimer on a hydrogenated semiconductor: Ge(001):H von Godlewski, Szymon, Kolmer, Marek, Lis, Jakub, Zuzak, Rafal, Such, Bartosz, Gren, Wojciech, Szymonski, Marek, Kantorovich, Lev

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Statistical Properties of Lasso-Shape Polymers and Their Implications for Complex Lasso Proteins Function von Dabrowski-Tumanski, Pawel, Gren, Bartosz, Sulkowska, Joanna I

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