Analysis of the Vertebrate Insulator Protein CTCF-Binding Sites in the Human Genome von Kim, Tae Hoon, Abdullaev, Ziedulla K., Smith, Andrew D., Ching, Keith A., Loukinov, Dmitri I., Green, Roland D., Zhang, Michael Q., Lobanenkov, Victor V., Ren, Bing

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Histone modifications at human enhancers reflect global cell-type-specific gene expression von Ren, Bing, Heintzman, Nathaniel D, Hon, Gary C, Hawkins, R. David, Kheradpour, Pouya, Stark, Alexander, Harp, Lindsey F, Ye, Zhen, Lee, Leonard K, Stuart, Rhona K, Ching, Christina W, Ching, Keith A, Antosiewicz-Bourget, Jessica E, Liu, Hui, Zhang, Xinmin, Green, Roland D, Lobanenkov, Victor V, Stewart, Ron, Thomson, James A, Crawford, Gregory E, Kellis, Manolis

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Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome von Ren, Bing, Heintzman, Nathaniel D, Stuart, Rhona K, Hon, Gary, Fu, Yutao, Ching, Christina W, Hawkins, R David, Barrera, Leah O, Van Calcar, Sara, Qu, Chunxu, Ching, Keith A, Wang, Wei, Weng, Zhiping, Green, Roland D, Crawford, Gregory E

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Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements von Dostie, Josée, Richmond, Todd A, Arnaout, Ramy A, Selzer, Rebecca R, Lee, William L, Honan, Tracey A, Rubio, Eric D, Krumm, Anton, Lamb, Justin, Nusbaum, Chad, Green, Roland D, Dekker, Job

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Arginine methylation at histone H3R2 controls deposition of H3K4 trimethylation von KIRMIZIS, Antonis, SANTOS-ROSA, Helena, PENKETT, Christopher J, SINGER, Michael A, VERMEULEN, Michiel, MANN, Matthias, BÄHLER, Jürg, GREEN, Roland D, KOUZARIDES, Tony

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A high-resolution map of active promoters in the human genome von Ren, Bing, Kim, Tae Hoon, Barrera, Leah O, Zheng, Ming, Qu, Chunxu, Singer, Michael A, Richmond, Todd A, Wu, Yingnian, Green, Roland D

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Comparative isoschizomer profiling of cytosine methylation: the HELP assay von Khulan, Batbayar, Thompson, Reid F, Ye, Kenny, Fazzari, Melissa J, Suzuki, Masako, Stasiek, Edyta, Figueroa, Maria E, Glass, Jacob L, Chen, Quan, Montagna, Cristina, Hatchwell, Eli, Selzer, Rebecca R, Richmond, Todd A, Green, Roland D, Melnick, Ari, Greally, John M

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The genomic distribution and function of histone variant HTZ-1 during C. elegans embryogenesis von Whittle, Christina M, McClinic, Karissa N, Ercan, Sevinc, Zhang, Xinmin, Green, Roland D, Kelly, William G, Lieb, Jason D

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Dynamic histone H3 epigenome marking during the intraerythrocytic cycle of Plasmodium falciparum von Salcedo-Amaya, Adriana M, van Driel, Marc A, Alako, Blaise T, Trelle, Morten B, van den Elzen, Antonia M.G, Cohen, Adrian M, Janssen-Megens, Eva M, van de Vegte-Bolmer, Marga, Selzer, Rebecca R, Iniguez, A. Leonardo, Green, Roland D, Sauerwein, Robert W, Jensen, Ole N, Stunnenberg, Hendrik G

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Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays von Stamatoyannopoulos, John A, Sabo, Peter J, Kuehn, Michael S, Thurman, Robert, Johnson, Brett E, Johnson, Ericka M, Cao, Hua, Yu, Man, Rosenzweig, Elizabeth, Goldy, Jeff, Haydock, Andrew, Weaver, Molly, Shafer, Anthony, Lee, Kristin, Neri, Fidencio, Humbert, Richard, Singer, Michael A, Richmond, Todd A, Dorschner, Michael O, McArthur, Michael, Hawrylycz, Michael, Green, Roland D, Navas, Patrick A, Noble, William S

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Genome-wide mapping and analysis of active promoters in mouse embryonic stem cells and adult organs von Barrera, Leah O, Li, Zirong, Smith, Andrew D, Arden, Karen C, Cavenee, Webster K, Zhang, Michael Q, Green, Roland D, Ren, Bing

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Analysis of chromosome breakpoints in neuroblastoma at sub-kilobase resolution using fine-tiling oligonucleotide array CGH von Selzer, Rebecca R., Richmond, Todd A., Pofahl, Nathan J., Green, Roland D., Eis, Peggy S., Nair, Prakash, Brothman, Arthur R., Stallings, Raymond L.

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Dynamic chromatin states in human ES cells reveal potential regulatory sequences and genes involved in pluripotency von Hawkins, R David, Hon, Gary C, Yang, Chuhu, Antosiewicz-Bourget, Jessica E, Lee, Leonard K, Ngo, Que-Minh, Klugman, Sarit, Ching, Keith A, Edsall, Lee E, Ye, Zhen, Kuan, Samantha, Yu, Pengzhi, Liu, Hui, Zhang, Xinmin, Green, Roland D, Lobanenkov, Victor V, Stewart, Ron, Thomson, James A, Ren, Bing

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Maskless fabrication of light-directed oligonucleotide microarrays using a digital micromirror array von Sussman, Michael R, Singh-Gasson, Sangeet, Green, Roland D, Yue, Yongjian, Nelson, Clark, Blattner, Fred, Cerrina, Franco

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X chromosome repression by localization of the C. elegans dosage compensation machinery to sites of transcription initiation von Lieb, Jason D, Ercan, Sevinc, Giresi, Paul G, Whittle, Christina M, Zhang, Xinmin, Green, Roland D

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Mutation discovery in bacterial genomes: metronidazole resistance in Helicobacter pylori von Albert, Thomas J, Berg, Douglas E, Dailidiene, Daiva, Dailide, Giedrius, Norton, Jason E, Kalia, Awdhesh, Richmond, Todd A, Molla, Michael, Singh, Jaz, Green, Roland D

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An integrative genomic and epigenomic approach for the study of transcriptional regulation von Figueroa, Maria E, Reimers, Mark, Thompson, Reid F, Ye, Kenny, Li, Yushan, Selzer, Rebecca R, Fridriksson, Jakob, Paietta, Elisabeth, Wiernik, Peter, Green, Roland D, Greally, John M, Melnick, Ari

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Gene expression analysis using oligonucleotide arrays produced by maskless photolithography von Nuwaysir, Emile F, Huang, Wei, Albert, Thomas J, Singh, Jaz, Nuwaysir, Kate, Pitas, Alan, Richmond, Todd, Gorski, Tom, Berg, James P, Ballin, Jeff, McCormick, Mark, Norton, Jason, Pollock, Tim, Sumwalt, Terry, Butcher, Lawrence, Porter, DeAnn, Molla, Michael, Hall, Christine, Blattner, Fred, Sussman, Michael R, Wallace, Rodney L, Cerrina, Franco, Green, Roland D

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SNP-specific array-based allele-specific expression analysis von Bjornsson, Hans T, Albert, Thomas J, Ladd-Acosta, Christine M, Green, Roland D, Rongione, Michael A, Middle, Christina M, Irizarry, Rafael A, Broman, Karl W, Feinberg, Andrew P

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ChIP-chip designs to interrogate the genome of Xenopus embryos for transcription factor binding and epigenetic regulation von Akkers, Robert C, van Heeringen, Simon J, Manak, J Robert, Green, Roland D, Stunnenberg, Hendrik G, Veenstra, Gert Jan C

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