Genomic Epidemiology of Gonococcal Resistance to Extended-Spectrum Cephalosporins, Macrolides, and Fluoroquinolones in the United States, 2000–2013 von Grad, Yonatan H., Harris, Simon R., Kirkcaldy, Robert D., Green, Anna G., Marks, Debora S., Bentley, Stephen D., Trees, David, Lipsitch, Marc

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The EVcouplings Python framework for coevolutionary sequence analysis von Hopf, Thomas A, Green, Anna G, Schubert, Benjamin, Mersmann, Sophia, Schärfe, Charlotta P I, Ingraham, John B, Toth-Petroczy, Agnes, Brock, Kelly, Riesselman, Adam J, Palmedo, Perry, Kang, Chan, Sheridan, Robert, Draizen, Eli J, Dallago, Christian, Sander, Chris, Marks, Debora S

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Large-scale discovery of protein interactions at residue resolution using co-evolution calculated from genomic sequences von Green, Anna G., Elhabashy, Hadeer, Brock, Kelly P., Maddamsetti, Rohan, Kohlbacher, Oliver, Marks, Debora S.

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Sequence co-evolution gives 3D contacts and structures of protein complexes von Hopf, Thomas A, Schärfe, Charlotta P I, Rodrigues, João P G L M, Green, Anna G, Kohlbacher, Oliver, Sander, Chris, Bonvin, Alexandre M J J, Marks, Debora S

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A convolutional neural network highlights mutations relevant to antimicrobial resistance in Mycobacterium tuberculosis von Green, Anna G., Yoon, Chang Ho, Chen, Michael L., Ektefaie, Yasha, Fina, Mack, Freschi, Luca, Gröschel, Matthias I., Kohane, Isaac, Beam, Andrew, Farhat, Maha

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Structure of the peptidoglycan polymerase RodA resolved by evolutionary coupling analysis von Sjodt, Megan, Brock, Kelly, Dobihal, Genevieve, Rohs, Patricia D. A., Green, Anna G., Hopf, Thomas A., Meeske, Alexander J., Srisuknimit, Veerasak, Kahne, Daniel, Walker, Suzanne, Marks, Debora S., Bernhardt, Thomas G., Rudner, David Z., Kruse, Andrew C.

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Dormant spores sense amino acids through the B subunits of their germination receptors von Artzi, Lior, Alon, Assaf, Brock, Kelly P., Green, Anna G., Tam, Amy, Ramírez-Guadiana, Fernando H., Marks, Debora, Kruse, Andrew, Rudner, David Z.

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Structural coordination of polymerization and crosslinking by a SEDS–bPBP peptidoglycan synthase complex von Sjodt, Megan, Rohs, Patricia D. A., Gilman, Morgan S. A., Erlandson, Sarah C., Zheng, Sanduo, Green, Anna G., Brock, Kelly P., Taguchi, Atsushi, Kahne, Daniel, Walker, Suzanne, Marks, Debora S., Rudner, David Z., Bernhardt, Thomas G., Kruse, Andrew C.

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Antiparallel protocadherin homodimers use distinct affinity- and specificity-mediating regions in cadherin repeats 1-4 von Nicoludis, John M, Vogt, Bennett E, Green, Anna G, Schärfe, Charlotta Pi, Marks, Debora S, Gaudet, Rachelle

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Reconstructed ancestral Myo-inositol-3-phosphate synthases indicate that ancestors of the Thermococcales and Thermotoga species were more thermophilic than their descendants von Butzin, Nicholas C, Lapierre, Pascal, Green, Anna G, Swithers, Kristen S, Gogarten, J Peter, Noll, Kenneth M

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Transcriptomic responses to antibiotic exposure in Mycobacterium tuberculosis von Poonawala, Husain, Zhang, Yu, Kuchibhotla, Sravya, Green, Anna G, Cirillo, Daniela Maria, Di Marco, Federico, Spitlaeri, Andrea, Miotto, Paolo, Farhat, Maha R

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Analysis of Genome-Wide Mutational Dependence in Naturally Evolving Mycobacterium tuberculosis Populations von Green, Anna G, Vargas, Roger, Marin, Maximillian G, Freschi, Luca, Xie, Jiaqi, Farhat, Maha R

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Interaction specificity of clustered protocadherins inferred from sequence covariation and structural analysis von Nicoludis, John M., Green, Anna G., Walujkar, Sanket, May, Elizabeth J., Sotomayor, Marcos, Marks, Debora S., Gaudet, Rachelle

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A rooted net of life von Williams, David, Fournier, Gregory P, Lapierre, Pascal, Swithers, Kristen S, Green, Anna G, Andam, Cheryl P, Gogarten, J Peter

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Reassessment of the lineage fusion hypothesis for the origin of double membrane bacteria von Swithers, Kristen S, Fournier, Gregory P, Green, Anna G, Gogarten, J Peter, Lapierre, Pascal

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Impact of a homing intein on recombination frequency and organismal fitness von Naor, Adit, Altman-Price, Neta, Soucy, Shannon M., Green, Anna G., Mitiagin, Yulia, Turgeman-Grott, Israela, Davidovich, Noam, Gogarten, Johann Peter, Gophna, Uri

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Core Genes Evolve Rapidly in the Long-Term Evolution Experiment with Escherichia coli von Maddamsetti, Rohan, Hatcher, Philip J, Green, Anna G, Williams, Barry L, Marks, Debora S, Lenski, Richard E

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Co-evolution of interacting proteins through non-contacting and non-specific mutations von Ding, David, Green, Anna G., Wang, Boyuan, Lite, Thuy-Lan Vo, Weinstein, Eli N., Marks, Debora S., Laub, Michael T.

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Genome sequence of the mesophilic Thermotogales bacterium Mesotoga prima MesG1.Ag.4.2 reveals the largest Thermotogales genome to date von Zhaxybayeva, Olga, Swithers, Kristen S, Foght, Julia, Green, Anna G, Bruce, David, Detter, Chris, Han, Shunsheng, Teshima, Hazuki, Han, James, Woyke, Tanja, Pitluck, Sam, Nolan, Matt, Ivanova, Natalia, Pati, Amrita, Land, Miriam L, Dlutek, Marlena, Doolittle, W Ford, Noll, Kenneth M, Nesbø, Camilla L

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Reconstruction of ancestral 16S rRNA reveals mutation bias in the evolution of optimal growth temperature in the Thermotogae phylum von Green, Anna G, Swithers, Kristen S, Gogarten, Jan F, Gogarten, Johann Peter

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