Using Attribution Sequence Alignment to Interpret Deep Learning Models for miRNA Binding Site Prediction von Grešová, Katarína, Vaculík, Ondřej, Alexiou, Panagiotis

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Genomic benchmarks: a collection of datasets for genomic sequence classification von Grešová, Katarína, Martinek, Vlastimil, Čechák, David, Šimeček, Petr, Alexiou, Panagiotis

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Small RNA Targets: Advances in Prediction Tools and High-Throughput Profiling von Grešová, Katarína, Alexiou, Panagiotis, Giassa, Ilektra-Chara

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Transfer Learning Allows Accurate RBP Target Site Prediction with Limited Sample Sizes von Vaculík, Ondřej, Chalupová, Eliška, Grešová, Katarína, Majtner, Tomáš, Alexiou, Panagiotis

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AlphaFind: discover structure similarity across the proteome in AlphaFold DB von Procházka, David, Slanináková, Terézia, Olha, Jaroslav, Rošinec, Adrián, Grešová, Katarína, Jánošová, Miriama, Čillík, Jakub, Porubská, Jana, Svobodová, Radka, Dohnal, Vlastislav, Antol, Matej

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miRBind: A Deep Learning Method for miRNA Binding Classification von Klimentová, Eva, Hejret, Václav, Krčmář, Ján, Grešová, Katarína, Giassa, Ilektra-Chara, Alexiou, Panagiotis

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Analysis of chimeric reads characterises the diverse targetome of AGO2-mediated regulation von Hejret, Vaclav, Varadarajan, Nandan Mysore, Klimentova, Eva, Gresova, Katarina, Giassa, Ilektra-Chara, Vanacova, Stepanka, Alexiou, Panagiotis

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RBP-Tar - a searchable database for experimental RBP binding sites [version 2; peer review: 2 approved with reservations] von Gresova, Katarina, Racek, Tomas, Martinek, Vlastimil, Cechak, David, Svobodova, Radka, Alexiou, Panagiotis

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RBP-Tar - a searchable database for experimental RBP binding sites [version 1; peer review: 2 approved with reservations] von Gresova, Katarina, Racek, Tomas, Martinek, Vlastimil, Cechak, David, Svobodova, Radka, Alexiou, Panagiotis

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RBP-Tar - a searchable database for experimental RBP binding sites [version 3; peer review: 2 approved, 4 approved with reservations] von Gresova, Katarina, Racek, Tomas, Martinek, Vlastimil, Cechak, David, Svobodova, Radka, Alexiou, Panagiotis

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miRBench datasets von Gresova, Katarina, Sammut, Stephanie, Tzimotoudis, Dimosthenis, Klimentova, Eva, Cechak, David, Alexiou, Panagiotis

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EU questionnaire to screen for obstructive sleep apnoea validated in Slovakia von Feketeová, Eva, Mucska, Imrich, Klobučníková, Katarina, Grešová, Soňa, Stimmelová, Judita, Paraničová, Ivana, Trojová, Ivana, Rosenberger, Jaroslav, Rimárová, Kvetoslava, Dorko, Erik

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