Unifying the spatial epidemiology and molecular evolution of emerging epidemics von Pybus, Oliver G, Suchard, Marc A, Lemey, Philippe, Bernardin, Flavien J, Rambaut, Andrew, Crawford, Forrest W, Gray, Rebecca R, Arinaminpathy, Nimalan, Stramer, Susan L, Busch, Michael P, Delwart, Eric L

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The mode and tempo of hepatitis C virus evolution within and among hosts von Gray, Rebecca R, Parker, Joe, Lemey, Philippe, Salemi, Marco, Katzourakis, Aris, Pybus, Oliver G

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A new evolutionary model for hepatitis C virus chronic infection von Gray, Rebecca R, Salemi, Marco, Klenerman, Paul, Pybus, Oliver G

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Evolutionary analysis of hepatitis C virus gene sequences from 1953 von Gray, Rebecca R., Tanaka, Yasuhito, Takebe, Yutaka, Magiorkinis, Gkikas, Buskell, Zelma, Seeff, Leonard, Alter, Harvey J., Pybus, Oliver G.

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Unexpected Maintenance of Hepatitis C Viral Diversity following Liver Transplantation von GRAY, Rebecca R, STRICKLAND, Samantha L, VERAS, Nazle M, GOODENOW, Maureen M, PYBUS, Oliver G, LEMON, Stanley M, FRIED, Michael W, NELSON, David R, SALEMI, Marco

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Distinct patterns of HIV-1 evolution within metastatic tissues in patients with non-Hodgkins lymphoma von Salemi, Marco, Lamers, Susanna L, Huysentruyt, Leanne C, Galligan, Derek, Gray, Rebecca R, Morris, Alanna, McGrath, Michael S

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Phylodynamics of HIV-1 in lymphoid and non-lymphoid tissues reveals a central role for the thymus in emergence of CXCR4-using quasispecies von Salemi, Marco, Burkhardt, Brant R, Gray, Rebecca R, Ghaffari, Guity, Sleasman, John W, Goodenow, Maureen M

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Ancient, independent evolution and distinct molecular features of the novel human T-lymphotropic virus type 4 von Switzer, William M, Salemi, Marco, Qari, Shoukat H, Jia, Hongwei, Gray, Rebecca R, Katzourakis, Aris, Marriott, Susan J, Pryor, Kendle N, Wolfe, Nathan D, Burke, Donald S, Folks, Thomas M, Heneine, Walid

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Spatial accessibility and the spread of HIV-1 subtypes and recombinants von TATEM, Andrew J, HEMELAAR, Joris, GRAY, Rebecca R, SALEMI, Marco

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Virology: The virus whose family expanded von Pybus, Oliver G, Gray, Rebecca R

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A novel methodology for large-scale phylogeny partition von Prosperi, Mattia C.F., Ciccozzi, Massimo, Fanti, Iuri, Saladini, Francesco, Pecorari, Monica, Borghi, Vanni, Di Giambenedetto, Simona, Bruzzone, Bianca, Capetti, Amedeo, Vivarelli, Angela, Rusconi, Stefano, Re, Maria Carla, Gismondo, Maria Rita, Sighinolfi, Laura, Gray, Rebecca R., Salemi, Marco, Zazzi, Maurizio, De Luca, Andrea

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Spatial phylodynamics of HIV-1 epidemic emergence in east Africa von GRAY, Rebecca R, TATEM, Andrew J, GOODENOW, Maureen M, SALEMI, Marco, LAMERS, Susanna, WEI HOU, LAEYENDECKER, Oliver, SERWADDA, David, SEWANKAMBO, Nelson, GRAY, Ronald H, WAWER, Maria, QUINN, Thomas C

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PhyloTempo: A Set of R Scripts for Assessing and Visualizing Temporal Clustering in Genealogies Inferred from Serially Sampled Viral Sequences von Norström, Melissa M., Prosperi, Mattia C.F., Gray, Rebecca R., Karlsson, Annika C., Salemi, Marco

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HIV-1 phylogenetic analysis shows HIV-1 transits through the meninges to brain and peripheral tissues von Lamers, Susanna L., Gray, Rebecca R., Salemi, Marco, Huysentruyt, Leanne C., McGrath, Michael S.

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Testing spatiotemporal hypothesis of bacterial evolution using methicillin-resistant Staphylococcus aureus ST239 genome-wide data within a bayesian framework von Gray, Rebecca R, Tatem, Andrew J, Johnson, Judith A, Alekseyenko, Alexander V, Pybus, Oliver G, Suchard, Marc A, Salemi, Marco

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HIV-1 Subtype distribution in morocco based on national sentinel surveillance data 2004-2005 von Akrim, Mohammed, Lemrabet, Sanae, Elharti, Elmir, Gray, Rebecca R, Tardy, Jean Claude, Cook, Robert L, Salemi, Marco, Andre, Patrice, Azarian, Taj, Aouad, Rajae El

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Integrative molecular phylogeography in the context of infectious diseases on the human-animal interface von GRAY, REBECCA R., SALEMI, MARCO

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The virus whose family expanded von Pybus, Oliver G., Gray, Rebecca R.

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An exploratory algorithm to identify intra-host recombinant viral sequences von Salemi, Marco, Gray, Rebecca R., Goodenow, Maureen M.

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Haplotype-Based Study of the Association of Alcohol-Metabolizing Genes With Alcohol Dependence in Four Independent Populations von Liu, Jixia, Zhou, Zhifeng, Hodgkinson, Colin A., Yuan, Qiaoping, Shen, Pei-Hong, Mulligan, Connie J., Wang, Alex, Gray, Rebecca R., Roy, Alec, Virkkunen, Matti, Goldman, David, Enoch, Mary-Anne

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