PRROC: computing and visualizing precision-recall and receiver operating characteristic curves in R von Grau, Jan, Grosse, Ivo, Keilwagen, Jens

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Accurate prediction of cell type-specific transcription factor binding von Keilwagen, Jens, Posch, Stefan, Grau, Jan

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Combining RNA-seq data and homology-based gene prediction for plants, animals and fungi von Keilwagen, Jens, Hartung, Frank, Paulini, Michael, Twardziok, Sven O, Grau, Jan

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Using intron position conservation for homology-based gene prediction von Keilwagen, Jens, Wenk, Michael, Erickson, Jessica L, Schattat, Martin H, Grau, Jan, Hartung, Frank

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Area under precision-recall curves for weighted and unweighted data von Keilwagen, Jens, Grosse, Ivo, Grau, Jan

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TALENoffer: genome-wide TALEN off-target prediction von Grau, Jan, Boch, Jens, Posch, Stefan

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DiffLogo: a comparative visualization of sequence motifs von Nettling, Martin, Treutler, Hendrik, Grau, Jan, Keilwagen, Jens, Posch, Stefan, Grosse, Ivo

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Insights gained from a comprehensive all-against-all transcription factor binding motif benchmarking study von Ambrosini, Giovanna, Vorontsov, Ilya, Penzar, Dmitry, Groux, Romain, Fornes, Oriol, Nikolaeva, Daria D., Ballester, Benoit, Grau, Jan, Grosse, Ivo, Makeev, Vsevolod, Kulakovskiy, Ivan, Bucher, Philipp

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Computational predictions provide insights into the biology of TAL effector target sites von Grau, Jan, Wolf, Annett, Reschke, Maik, Bonas, Ulla, Posch, Stefan, Boch, Jens

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Epigenetic features improve TALE target prediction von Erkes, Annett, Mucke, Stefanie, Reschke, Maik, Boch, Jens, Grau, Jan

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PrediTALE: A novel model learned from quantitative data allows for new perspectives on TALE targeting von Erkes, Annett, Mücke, Stefanie, Reschke, Maik, Boch, Jens, Grau, Jan

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AnnoTALE: bioinformatics tools for identification, annotation and nomenclature of TALEs from Xanthomonas genomic sequences von Grau, Jan, Reschke, Maik, Erkes, Annett, Streubel, Jana, Morgan, Richard D., Wilson, Geoffrey G., Koebnik, Ralf, Boch, Jens

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Dissection of TALE-dependent gene activation reveals that they induce transcription cooperatively and in both orientations von Streubel, Jana, Baum, Heidi, Grau, Jan, Stuttmann, Johannes, Boch, Jens

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Genome-Wide Identification and Validation of Reference Genes in Infected Tomato Leaves for Quantitative RT-PCR Analyses von Müller, Oliver A, Grau, Jan, Thieme, Sabine, Prochaska, Heike, Adlung, Norman, Sorgatz, Anika, Bonas, Ulla

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Assembling highly repetitive Xanthomonas TALomes using Oxford Nanopore sequencing von Erkes, Annett, Grove, René P, Žarković, Milena, Krautwurst, Sebastian, Koebnik, Ralf, Morgan, Richard D, Wilson, Geoffrey G, Hölzer, Martin, Marz, Manja, Boch, Jens, Grau, Jan

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Transcriptional Reprogramming of Rice Cells by Xanthomonas oryzae TALEs von Mücke, Stefanie, Reschke, Maik, Erkes, Annett, Schwietzer, Claudia-Alice, Becker, Sebastian, Streubel, Jana, Morgan, Richard D, Wilson, Geoffrey G, Grau, Jan, Boch, Jens

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GeMoMa: Homology-Based Gene Prediction Utilizing Intron Position Conservation and RNA-seq Data von Keilwagen, Jens, Hartung, Frank, Grau, Jan

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Correction: Dissection of TALE-dependent gene activation reveals that they induce transcription cooperatively and in both orientations von Streubel, Jana, Baum, Heidi, Grau, Jan, Stuttmann, Johannes, Boch, Jens

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A TAL effector repeat architecture for frameshift binding von Richter, Annekatrin, Streubel, Jana, Blücher, Christina, Szurek, Boris, Reschke, Maik, Grau, Jan, Boch, Jens

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Importance of RpoD- and Non-RpoD-Dependent Expression of Horizontally Acquired Genes in Cupriavidus metallidurans von Große, Cornelia, Grau, Jan, Große, Ivo, Nies, Dietrich H

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