Brain Modeling ToolKit: An open source software suite for multiscale modeling of brain circuits von Dai, Kael, Gratiy, Sergey L., Billeh, Yazan N., Xu, Richard, Cai, Binghuang, Cain, Nicholas, Rimehaug, Atle E., Stasik, Alexander J., Einevoll, Gaute T., Mihalas, Stefan, Koch, Christof, Arkhipov, Anton

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BioNet: A Python interface to NEURON for modeling large-scale networks von Gratiy, Sergey L, Billeh, Yazan N, Dai, Kael, Mitelut, Catalin, Feng, David, Gouwens, Nathan W, Cain, Nicholas, Koch, Christof, Anastassiou, Costas A, Arkhipov, Anton

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Systematic Integration of Structural and Functional Data into Multi-scale Models of Mouse Primary Visual Cortex von Billeh, Yazan N., Cai, Binghuang, Gratiy, Sergey L., Dai, Kael, Iyer, Ramakrishnan, Gouwens, Nathan W., Abbasi-Asl, Reza, Jia, Xiaoxuan, Siegle, Joshua H., Olsen, Shawn R., Koch, Christof, Mihalas, Stefan, Arkhipov, Anton

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The SONATA data format for efficient description of large-scale network models von Dai, Kael, Hernando, Juan, Billeh, Yazan N., Gratiy, Sergey L., Planas, Judit, Davison, Andrew P., Dura-Bernal, Salvador, Gleeson, Padraig, Devresse, Adrien, Dichter, Benjamin K., Gevaert, Michael, King, James G., Van Geit, Werner A. H., Povolotsky, Arseny V., Muller, Eilif, Courcol, Jean-Denis, Arkhipov, Anton

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Fully integrated silicon probes for high-density recording of neural activity von Jun, James J., Steinmetz, Nicholas A., Siegle, Joshua H., Denman, Daniel J., Bauza, Marius, Barbarits, Brian, Lee, Albert K., Anastassiou, Costas A., Andrei, Alexandru, Aydın, Çağatay, Barbic, Mladen, Blanche, Timothy J., Bonin, Vincent, Couto, João, Dutta, Barundeb, Gratiy, Sergey L., Gutnisky, Diego A., Häusser, Michael, Karsh, Bill, Ledochowitsch, Peter, Lopez, Carolina Mora, Mitelut, Catalin, Musa, Silke, Okun, Michael, Pachitariu, Marius, Putzeys, Jan, Rich, P. Dylan, Rossant, Cyrille, Sun, Wei-lung, Svoboda, Karel, Carandini, Matteo, Harris, Kenneth D., Koch, Christof, O’Keefe, John, Harris, Timothy D.

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In vivo stimulus-induced vasodilation occurs without IP3 receptor activation and may precede astrocytic calcium increase von Nizar, Krystal, Uhlirova, Hana, Tian, Peifang, Saisan, Payam A, Cheng, Qun, Reznichenko, Lidia, Weldy, Kimberly L, Steed, Tyler C, Sridhar, Vishnu B, MacDonald, Christopher L, Cui, Jianxia, Gratiy, Sergey L, Sakadzić, Sava, Boas, David A, Beka, Thomas I, Einevoll, Gaute T, Chen, Ju, Masliah, Eliezer, Dale, Anders M, Silva, Gabriel A, Devor, Anna

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From Maxwell's equations to the theory of current‐source density analysis von Gratiy, Sergey L., Halnes, Geir, Denman, Daniel, Hawrylycz, Michael J., Koch, Christof, Einevoll, Gaute T., Anastassiou, Costas A., Poirazi, Panayiota

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Visual physiology of the layer 4 cortical circuit in silico von Arkhipov, Anton, Gouwens, Nathan W, Billeh, Yazan N, Gratiy, Sergey, Iyer, Ramakrishnan, Wei, Ziqiang, Xu, Zihao, Abbasi-Asl, Reza, Berg, Jim, Buice, Michael, Cain, Nicholas, da Costa, Nuno, de Vries, Saskia, Denman, Daniel, Durand, Severine, Feng, David, Jarsky, Tim, Lecoq, Jérôme, Lee, Brian, Li, Lu, Mihalas, Stefan, Ocker, Gabriel K, Olsen, Shawn R, Reid, R Clay, Soler-Llavina, Gilberto, Sorensen, Staci A, Wang, Quanxin, Waters, Jack, Scanziani, Massimo, Koch, Christof

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Pitfalls in the interpretation of multielectrode data: on the infeasibility of the neuronal current-source monopoles von Gratiy, Sergey L, Pettersen, Klas H, Einevoll, Gaute T, Dale, Anders M

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In vivo alterations in calcium buffering capacity in transgenic mouse model of synucleinopathy von Reznichenko, Lidia, Cheng, Qun, Nizar, Krystal, Gratiy, Sergey L, Saisan, Payam A, Rockenstein, Edward M, González, Tanya, Patrick, Christina, Spencer, Brian, Desplats, Paula, Dale, Anders M, Devor, Anna, Masliah, Eliezer

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A comprehensive numerical simulation of Io’s sublimation-driven atmosphere von Walker, Andrew C., Gratiy, Sergey L., Goldstein, David B., Moore, Chris H., Varghese, Philip L., Trafton, Laurence M., Levin, Deborah A., Stewart, Bénédicte

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On the estimation of population-specific synaptic currents from laminar multielectrode recordings von Gratiy, Sergey L, Devor, Anna, Einevoll, Gaute T, Dale, Anders M

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Rassvet: Backward Monte Carlo radiative transfer in spherical-shell planetary atmospheres von Gratiy, Sergey L., Levin, Deborah A., Walker, Andrew C.

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In Vivo Alterations in Calcium Buffering Capacity in Transgenic Mouse Model of Synucleinopathy von Reznichenko, L., Cheng, Q., Nizar, K., Gratiy, S. L., Saisan, P. A., Rockenstein, E. M., Gonzalez, T., Patrick, C., Spencer, B., Desplats, P., Dale, A. M., Devor, A., Masliah, E.

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Multi-wavelength simulations of atmospheric radiation from Io with a 3-D spherical-shell backward Monte Carlo radiative transfer model von Gratiy, Sergey L., Walker, Andrew C., Levin, Deborah A., Goldstein, David B., Varghese, Philip L., Trafton, Laurence M., Moore, Chris H.

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Inferring cortical function in the mouse visual system through large-scale systems neuroscience von Hawrylycz, Michael, Anastassiou, Costas, Arkhipov, Anton, Berg, Jim, Buice, Michael, Cain, Nicholas, Gouwens, Nathan W., Gratiy, Sergey, Iyer, Ramakrishnan, Lee, Jung Hoon, Mihalas, Stefan, Mitelut, Catalin, Olsen, Shawn, Reid, R. Clay, Teeter, Corinne, de Vries, Saskia, Waters, Jack, Zeng, Hongkui, Koch, Christof

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From Maxwell's equations to the theory of current-source density analysis von Gratiy, Sergey L., Halnes, Geir, Denman, Daniel, Hawrylycz, Michael J, Koch, Christof, Einevoll, Gaute, Anastassiou, Costas A

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SEA‐AD: Scientific analysis and open access resources targeting early changes in Alzheimer’s disease von Miller, Jeremy A, Hawrylycz, Michael J, Aitken, Matthew, Ariza, Jeannelle, Chakrabarty, Rushil, Ding, Song‐Lin, Ding, Yi, Ferrer, Rebecca, Goldy, Jeff, Gratiy, Sergey, Guilford, Nathan, Guzman, Junitta, Kaplan, Eitan S, Mei, Nicholas, Melief, Erica J, Nyhus, Julie, Pham, Thanh, Rachleff, Victoria M, Samson, Jake, Smith, Kimberly, Torkelson, Amy, Travaglini, Kyle J, Wakeman, Wayne, Close, Jennie, Crane, Paul K, Darvas, Martin, Gabitto, Mariano I, Grabowski, Thomas J, Hodge, Rebecca D, Jayadev, Suman, Latimer, Caitlin S, Levi, Boaz P, Long, Brian, MacDonald, Christine, Mukherjee, Shubhabrata, Larson, Eric B, Keene, C. Dirk, Lein, Ed S

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Modeling Io's Sublimation-Driven Atmosphere: Gas Dynamics and Radiation Emission von Walker, Andrew C, Gratiy, Sergey L, Levin, Deborah A, Goldstein, David B, Varghese, Philip L, Trafton, Laurence M, Moore, Chris H, Stewart, Benedicte

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Estimation of Population-Specific Synaptic Currents from Laminar Multielectrode Local Field Potential Recordings von Gratiy, Sergey L., Devor, Anna, Einevoll, Gaute T., Dale, Anders M.

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