RNA velocity unraveled von Gorin, Gennady, Fang, Meichen, Chari, Tara, Pachter, Lior

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Protein velocity and acceleration from single-cell multiomics experiments von Gorin, Gennady, Svensson, Valentine, Pachter, Lior

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Assessing Markovian and Delay Models for Single-Nucleus RNA Sequencing von Gorin, Gennady, Yoshida, Shawn, Pachter, Lior

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Trajectory inference from single-cell genomics data with a process time model von Fang, Meichen, Gorin, Gennady, Pachter, Lior

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Interpretable and tractable models of transcriptional noise for the rational design of single-molecule quantification experiments von Gorin, Gennady, Vastola, John J., Fang, Meichen, Pachter, Lior

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Length biases in single-cell RNA sequencing of pre-mRNA von Gorin, Gennady, Pachter, Lior

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Stochastic simulation and statistical inference platform for visualization and estimation of transcriptional kinetics von Gorin, Gennady, Wang, Mengyu, Golding, Ido, Xu, Heng

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Modeling bursty transcription and splicing with the chemical master equation von Gorin, Gennady, Pachter, Lior

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New and notable: Revisiting the “two cultures” through extrinsic noise von Gorin, Gennady, Pachter, Lior

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Analysis of Length Biases in Single-Cell RNA Sequencing of Unspliced mRNA by Markov Modeling von Gorin, Gennady, Pachter, Lior

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Biophysical modeling with variational autoencoders for bimodal, single-cell RNA sequencing data von Carilli, Maria, Gorin, Gennady, Choi, Yongin, Chari, Tara, Pachter, Lior

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Special function methods for bursty models of transcription von Gorin, Gennady, Pachter, Lior

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Spectral neural approximations for models of transcriptional dynamics von Gorin, Gennady, Carilli, Maria, Chari, Tara, Pachter, Lior

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Biophysically interpretable inference of cell types from multimodal sequencing data von Chari, Tara, Gorin, Gennady, Pachter, Lior

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Biophysical model for joint analysis of chromatin and RNA sequencing data von Felce, Catherine, Gorin, Gennady, Pachter, Lior

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Learning the Dynamics of Bursty Transcription and Splicing using Ultra-Fast Parameter Inference and New Analytical Solutions of the Chemical Master Equation von Vastola, John J., Gorin, Gennady, Pachter, Lior, Holmes, William R.

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Studying stochastic systems biology of the cell with single-cell genomics data von Gorin, Gennady, Vastola, John J., Pachter, Lior

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Supporting data for "Studying stochastic systems biology of the cell with single-cell genomics data" von Gorin, Gennady

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Monod supporting data von Gorin, Gennady, Pachter, Lior

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10x PBMC 1k v3 von Gorin, Gennady

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