An expanded population of CD8dim T cells with features of mitochondrial dysfunction and senescence is associated with persistent HIV-associated Kaposi’s sarcoma under ART von Clutton, Genevieve T., Weideman, Ann Marie K., Goonetilleke, Nilu P., Maurer, Toby

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CD3 downregulation identifies high-avidity human CD8 T cells von Clutton, Genevieve T, Weideman, Ann Marie K, Mischell, Melissa A, Kallon, Sallay, Conrad, Shayla Z, Shaw, Fiona R, Warren, Joanna A, Lin, Lin, Kuruc, JoAnn D, Xu, Yinyan, Gay, Cynthia M, Armistead, Paul M, G Hudgens, Michael, Goonetilleke, Nilu P

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Enhanced Immunogenicity and Protective Efficacy Against Mycobacterium tuberculosis of Bacille Calmette-Guerin Vaccine Using Mucosal Administration and Boosting with a Recombinant M... von Goonetilleke, Nilu P, McShane, Helen, Hannan, Carolyn M, Anderson, Richard J, Brookes, Roger H, Hill, Adrian V. S

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Boosting BCG with MVA85A: the first candidate subunit vaccine for tuberculosis in clinical trials von McShane, Helen, Pathan, Ansar A., Sander, Clare R., Goonetilleke, Nilu P., Fletcher, Helen A., Hill, Adrian V.S.

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An expanded population of CD8 dim T cells with features of mitochondrial dysfunction and senescence is associated with persistent HIV-associated Kaposi's sarcoma under ART von Clutton, Genevieve T, Weideman, Ann Marie K, Goonetilleke, Nilu P, Maurer, Toby

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Enhanced Immunogenicity and Protective Efficacy Against Mycobacterium tuberculosis of Bacille Calmette-Guérin Vaccine Using Mucosal Administration and Boosting with a Recombinant... von Goonetilleke, Nilu P., McShane, Helen, Hannan, Carolyn M., Anderson, Richard J., Brookes, Roger H., Hill, Adrian V. S.

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Machine learning approaches identify immunologic signatures of total and intact HIV DNA during long-term antiretroviral therapy von Semenova, Lesia, Wang, Yingfan, Falcinelli, Shane, Archin, Nancie, Cooper-Volkheimer, Alicia D, Margolis, David M, Goonetilleke, Nilu, Murdoch, David M, Rudin, Cynthia D, Browne, Edward P

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Relative rate and location of intra-host HIV evolution to evade cellular immunity are predictable von Barton, John P., Goonetilleke, Nilu, Butler, Thomas C., Walker, Bruce D., McMichael, Andrew J., Chakraborty, Arup K.

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Fitness Costs and Diversity of the Cytotoxic T Lymphocyte (CTL) Response Determine the Rate of CTL Escape during Acute and Chronic Phases of HIV Infection von GANUSOV, Vitaly V, GOONETILLEKE, Nilu, LIU, Michael K. P, FERRARI, Guido, SHAW, George M, MCMICHAEL, Andrew J, BORROW, Persephone, KORBER, Bette T, PERELSON, Alan S

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Temporal Dynamics of CD8+ T Cell Effector Responses during Primary HIV Infection von Demers, Korey R, Makedonas, George, Buggert, Marcus, Eller, Michael A, Ratcliffe, Sarah J, Goonetilleke, Nilu, Li, Chris K, Eller, Leigh Anne, Rono, Kathleen, Maganga, Lucas, Nitayaphan, Sorachai, Kibuuka, Hannah, Routy, Jean-Pierre, Slifka, Mark K, Haynes, Barton F, McMichael, Andrew J, Bernard, Nicole F, Robb, Merlin L, Betts, Michael R

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Aminobisphosphonates reactivate the latent reservoir in people living with HIV-1 von Sanz, Marta, Weideman, Ann Marie K., Ward, Adam R., Clohosey, Matthew L., Garcia-Recio, Susana, Selitsky, Sara R., Mann, Brendan T., Iannone, Marie Anne, Whitworth, Chloe P., Chitrakar, Alisha, Garrido, Carolina, Kirchherr, Jennifer, Coffey, Alisha R., Tsai, Yi- Hsuan, Samir, Shahryar, Xu, Yinyan, Copertino, Dennis, Bosque, Alberto, Jones, Brad R., Parker, Joel S., Hudgens, Michael G., Goonetilleke, Nilu, Soriano-Sarabia, Natalia

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Machine learning approaches identify immunologic signatures of total and intact HIV DNA during long-term antiretroviral therapy von Semenova, Lesia, Wang, Yingfan, Falcinelli, Shane, Archin, Nancie, Cooper-Volkheimer, Alicia D, Margolis, David M, Goonetilleke, Nilu, Murdoch, David M, Rudin, Cynthia D, Browne, Edward P

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A histone deacetylase network regulates epigenetic reprogramming and viral silencing in HIV-infected cells von Peterson, Jackson J., Lewis, Catherine A., Burgos, Samuel D., Manickam, Ashokkumar, Xu, Yinyan, Rowley, Allison A., Clutton, Genevieve, Richardson, Brian, Zou, Fei, Simon, Jeremy M., Margolis, David M., Goonetilleke, Nilu, Browne, Edward P.

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The first T cell response to transmitted/founder virus contributes to the control of acute viremia in HIV-1 infection von Goonetilleke, Nilu, Liu, Michael K P, Salazar-Gonzalez, Jesus F, Ferrari, Guido, Giorgi, Elena, Ganusov, Vitaly V, Keele, Brandon F, Learn, Gerald H, Turnbull, Emma L, Salazar, Maria G, Weinhold, Kent J, Moore, Stephen, Letvin, Norman, Haynes, Barton F, Cohen, Myron S, Hraber, Peter, Bhattacharya, Tanmoy, Borrow, Persephone, Perelson, Alan S, Hahn, Beatrice H, Shaw, George M, Korber, Bette T, McMichael, Andrew J

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Relationship between functional profile of HIV-1 specific CD8 T cells and epitope variability with the selection of escape mutants in acute HIV-1 infection von Ferrari, Guido, Korber, Bette, Goonetilleke, Nilu, Liu, Michael K P, Turnbull, Emma L, Salazar-Gonzalez, Jesus F, Hawkins, Natalie, Self, Steve, Watson, Sydeaka, Betts, Michael R, Gay, Cynthia, McGhee, Kara, Pellegrino, Pierre, Williams, Ian, Tomaras, Georgia D, Haynes, Barton F, Gray, Clive M, Borrow, Persephone, Roederer, Mario, McMichael, Andrew J, Weinhold, Kent J

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Vertical T cell immunodominance and epitope entropy determine HIV-1 escape von Liu, Michael K P, Hawkins, Natalie, Ritchie, Adam J, Ganusov, Vitaly V, Whale, Victoria, Brackenridge, Simon, Li, Hui, Pavlicek, Jeffrey W, Cai, Fangping, Rose-Abrahams, Melissa, Treurnicht, Florette, Hraber, Peter, Riou, Catherine, Gray, Clive, Ferrari, Guido, Tanner, Rachel, Ping, Li-Hua, Anderson, Jeffrey A, Swanstrom, Ronald, Cohen, Myron, Karim, Salim S Abdool, Haynes, Barton, Borrow, Persephone, Perelson, Alan S, Shaw, George M, Hahn, Beatrice H, Williamson, Carolyn, Korber, Bette T, Gao, Feng, Self, Steve, McMichael, Andrew, Goonetilleke, Nilu

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An Early HIV Mutation within an HLA-B57-Restricted T Cell Epitope Abrogates Binding to the Killer Inhibitory Receptor 3DL1 von BRACKENRIDGE, Simon, EVANS, Edward J, TOEBES, Mireille, GOONETILLEKE, Nilu, LIU, Michael K. P, DI GLERIA, Kati, SCHUMACHER, Ton N, DAVIS, Simon J, MCMICHAEL, Andrew J, GILLESPIE, Geraldine M

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A strongly selected mutation in the HIV-1 genome is independent of T cell responses and neutralizing antibodies von Liu, Donglai, Wang, Chu, Hora, Bhavna, Zuo, Tao, Goonetilleke, Nilu, Liu, Michael K P, Berrong, Mark, Ferrari, Guido, McMichael, Andrew J, Bhattacharya, Tanmoy, Perelson, Alan S, Gao, Feng

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Reversion and T cell escape mutations compensate the fitness loss of a CD8+ T cell escape mutant in their cognate transmitted/founder virus von Song, Hongshuo, Hora, Bhavna, Bhattacharya, Tanmoy, Goonetilleke, Nilu, Liu, Michael K P, Wiehe, Kevin, Li, Hui, Iyer, Shilpa S, McMichael, Andrew J, Perelson, Alan S, Gao, Feng

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Differences in HIV-Specific T Cell Responses between HIV-Exposed and -Unexposed HIV-Seronegative Individuals von RITCHIE, Adam J, CAMPION, Suzanne L, LEGG, Kenneth, COHEN, Myron S, DELWART, Eric L, HAYNES, Barton F, FIDLER, Sarah, MCMICHAEL, Andrew J, GOONETILLEKE, Nilu, KOPYCINSKI, Jakub, MOODIE, Zoe, WANG, Z. Maggie, PANDYA, Kruti, MOORE, Stephen, LIU, Michael K. P, BRACKENRIDGE, Simon, KULDANEK, Kristin

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