Mammalian NET-seq analysis defines nascent RNA profiles and associated RNA processing genome-wide von Nojima, Takayuki, Gomes, Tomás, Carmo-Fonseca, Maria, Proudfoot, Nicholas J

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Mammalian NET-Seq reveals genome-wide nascent transcription coupled to RNA processing von Nojima, Takayuki, Gomes, Tomás, Grosso, Ana Rita, Kimura, Hiroshi, Dye, Michael J., Dhir, Somdutta, Carmo-Fonseca, Maria, Proudfoot, Nicholas J.

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RNA Polymerase II Phosphorylated on CTD Serine 5 Interacts with the Spliceosome during Co-transcriptional Splicing von Nojima, Takayuki, Rebelo, Kenny, Gomes, Tomás, Grosso, Ana Rita, Proudfoot, Nicholas J., Carmo-Fonseca, Maria

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Immunology Driven by Large-Scale Single-Cell Sequencing von Gomes, Tomás, Teichmann, Sarah A., Talavera-López, Carlos

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Single-Cell Transcriptomics of Regulatory T Cells Reveals Trajectories of Tissue Adaptation von Miragaia, Ricardo J., Gomes, Tomás, Chomka, Agnieszka, Jardine, Laura, Riedel, Angela, Hegazy, Ahmed N., Whibley, Natasha, Tucci, Andrea, Chen, Xi, Lindeman, Ida, Emerton, Guy, Krausgruber, Thomas, Shields, Jacqueline, Haniffa, Muzlifah, Powrie, Fiona, Teichmann, Sarah A.

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Single-Cell Sequencing of Developing Human Gut Reveals Transcriptional Links to Childhood Crohn’s Disease von Elmentaite, Rasa, Ross, Alexander D.B., Roberts, Kenny, James, Kylie R., Ortmann, Daniel, Gomes, Tomás, Nayak, Komal, Tuck, Liz, Pritchard, Sophie, Bayraktar, Omer Ali, Heuschkel, Robert, Vallier, Ludovic, Teichmann, Sarah A., Zilbauer, Matthias

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Genome-wide CRISPR Screens in T Helper Cells Reveal Pervasive Crosstalk between Activation and Differentiation von Henriksson, Johan, Chen, Xi, Gomes, Tomás, Ullah, Ubaid, Meyer, Kerstin B., Miragaia, Ricardo, Duddy, Graham, Pramanik, Jhuma, Yusa, Kosuke, Lahesmaa, Riitta, Teichmann, Sarah A.

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An antiviral response beyond immune cells von Gomes, Tomás, Teichmann, Sarah A.

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Gene expression variability across cells and species shapes innate immunity von Hagai, Tzachi, Chen, Xi, Miragaia, Ricardo J., Rostom, Raghd, Gomes, Tomás, Kunowska, Natalia, Henriksson, Johan, Park, Jong-Eun, Proserpio, Valentina, Donati, Giacomo, Bossini-Castillo, Lara, Vieira Braga, Felipe A., Naamati, Guy, Fletcher, James, Stephenson, Emily, Vegh, Peter, Trynka, Gosia, Kondova, Ivanela, Dennis, Mike, Haniffa, Muzlifah, Nourmohammad, Armita, Lässig, Michael, Teichmann,Sarah A.

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Immune Cell Dynamics Unfolded by Single-Cell Technologies von Kunz, Daniel J, Gomes, Tomás, James, Kylie R

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Microbiomes associated with Coffea arabica and Coffea canephora in four different floristic domains of Brazil von Veloso, Tomás Gomes Reis, da Silva, Marliane de Cássia Soares, Moreira, Taís Rizzo, da Luz, José Maria Rodrigues, Moreli, Aldemar Polonini, Kasuya, Maria Catarina Megumi, Pereira, Lucas Louzada

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Cell atlas of the regenerating human liver after portal vein embolization von Brazovskaja, Agnieska, Gomes, Tomás, Holtackers, Rene, Wahle, Philipp, Körner, Christiane, He, Zhisong, Schaffer, Theresa, Eckel, Julian Connor, Hänsel, René, Santel, Malgorzata, Seimiya, Makiko, Denecke, Timm, Dannemann, Michael, Brosch, Mario, Hampe, Jochen, Seehofer, Daniel, Damm, Georg, Camp, J. Gray, Treutlein, Barbara

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Endophytic and mycorrhizal fungi associated with roots of endangered native orchids from the Atlantic Forest, Brazil von Oliveira, Sabrina Feliciano, Bocayuva, Melissa Faust, Veloso, Tomás Gomes Reis, Bazzolli, Denise Mara Soares, da Silva, Cynthia Canedo, Pereira, Olinto Liparini, Kasuya, Maria Catarina Megumi

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Genome-wide analyses reveal the IRE1a-XBP1 pathway promotes T helper cell differentiation by resolving secretory stress and accelerating proliferation von Pramanik, Jhuma, Chen, Xi, Kar, Gozde, Henriksson, Johan, Gomes, Tomás, Park, Jong-Eun, Natarajan, Kedar, Meyer, Kerstin B, Miao, Zhichao, McKenzie, Andrew N J, Mahata, Bidesh, Teichmann, Sarah A

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Tumor necrosis factor receptor family costimulation increases regulatory T‐cell activation and function via NF‐κB von Lubrano di Ricco, Martina, Ronin, Emilie, Collares, Davi, Divoux, Jordane, Grégoire, Sylvie, Wajant, Harald, Gomes, Tomás, Grinberg‐Bleyer, Yenkel, Baud, Véronique, Marodon, Gilles, Salomon, Benoît L.

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Exploring the microbiome of coffee plants: Implications for coffee quality and production von dos Santos Gomes, Willian, Pereira, Lucas Louzada, Rodrigues da Luz, José Maria, Soares da Silva, Marliane de Cássia, Reis Veloso, Tomás Gomes, Partelli, Fábio Luiz

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Single-cell RNA-sequencing resolves self-antigen expression during mTEC development von Miragaia, Ricardo J., Zhang, X., Gomes, Tomás, Svensson, V., Ilicic, T., Henriksson, J., Kar, G., Lönnberg, T.

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Microbial successional pattern along a glacier retreat gradient from Byers Peninsula, Maritime Antarctica von Silva, Jônatas Pedro da, Veloso, Tomás Gomes Reis, Costa, Maurício Dutra, Souza, José João Lelis Leal de, Soares, Emanuelle Mercês Barros, Gomes, Lucas Carvalho, Schaefer, Carlos Ernesto G R

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Seasonal variation in the Canastra cheese mycobiota von Martin, José Guilherme Prado, Silva, João Marcos Maia, César, Isabel Cristina da Rocha, da Silva, Meiriele, Santana, Samara Aparecida, Veloso, Tomás Gomes Reis, Silva, Jonas Guimarães E, Ferreira, Celia Lucia de Luces Fortes, Leech, John, Cotter, Paul D

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Melipona stingless bees and honey microbiota reveal the diversity, composition, and modes of symbionts transmission von Cerqueira, Alan Emanuel Silva, Lima, Helena Santiago, Silva, Lívia Carneiro Fidélis, Veloso, Tomás Gomes Reis, de Paula, Sérgio Oliveira, Santana, Weyder Cristiano, da Silva, Cynthia Canêdo

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