Ribose-Map: a bioinformatics toolkit to map ribonucleotides embedded in genomic DNA von Gombolay, Alli L, Vannberg, Fredrik O, Storici, Francesca

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Light-strand bias and enriched zones of embedded ribonucleotides are associated with DNA replication and transcription in the human-mitochondrial genome von Xu, Penghao, Yang, Taehwan, Kundnani, Deepali L, Sun, Mo, Marsili, Stefania, Gombolay, Alli L, Jeon, Youngkyu, Newnam, Gary, Balachander, Sathya, Bazzani, Veronica, Baccarani, Umberto, Park, Vivian S, Tao, Sijia, Lori, Adriana, Schinazi, Raymond F, Kim, Baek, Pursell, Zachary F, Tell, Gianluca, Vascotto, Carlo, Storici, Francesca

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Ribonucleotide incorporation in yeast genomic DNA shows preference for cytosine and guanosine preceded by deoxyadenosine von Balachander, Sathya, Gombolay, Alli L., Yang, Taehwan, Xu, Penghao, Newnam, Gary, Keskin, Havva, El-Sayed, Waleed M. M., Bryksin, Anton V., Tao, Sijia, Bowen, Nicole E., Schinazi, Raymond F., Kim, Baek, Koh, Kyung Duk, Vannberg, Fredrik O., Storici, Francesca

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Mapping ribonucleotides embedded in genomic DNA to single-nucleotide resolution using Ribose-Map von Gombolay, Alli L., Storici, Francesca

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Distinct features of ribonucleotides within genomic DNA in Aicardi-Goutières syndrome ortholog mutants of Saccharomyces cerevisiae von Kundnani, Deepali L., Yang, Taehwan, Gombolay, Alli L., Mukherjee, Kuntal, Newnam, Gary, Meers, Chance, Verma, Ishika, Chhatlani, Kirti, Mehta, Zeel H., Mouawad, Celine, Storici, Francesca

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Genetic Characterization of Three Distinct Mechanisms Supporting RNA-Driven DNA Repair and Modification Reveals Major Role of DNA Polymerase ζ von Meers, Chance, Keskin, Havva, Banyai, Gabor, Mazina, Olga, Yang, Taehwan, Gombolay, Alli L., Mukherjee, Kuntal, Kaparos, Efiyenia I., Newnam, Gary, Mazin, Alexander, Storici, Francesca

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Disproportionate presence of adenosine in mitochondrial and chloroplast DNA of Chlamydomonas reinhardtii von El-Sayed, Waleed M.M., Gombolay, Alli L., Xu, Penghao, Yang, Taehwan, Jeon, Youngkyu, Balachander, Sathya, Newnam, Gary, Tao, Sijia, Bowen, Nicole E., Brůna, Tomáš, Borodovsky, Mark, Schinazi, Raymond F., Kim, Baek, Chen, Yongsheng, Storici, Francesca

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Ribose-Map: A bioinformatics toolkit for ribonucleotide sequencing experiments von Gombolay, Alli L., Storici, Francesca

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