The net of life: reconstructing the microbial phylogenetic network von Kunin, Victor, Goldovsky, Leon, Darzentas, Nikos, Ouzounis, Christos A

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Construction, visualisation, and clustering of transcription networks from microarray expression data von Freeman, Tom C, Goldovsky, Leon, Brosch, Markus, van Dongen, Stijn, Mazière, Pierre, Grocock, Russell J, Freilich, Shiri, Thornton, Janet, Enright, Anton J

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Emergence, development and diversification of the TGF-beta signalling pathway within the animal kingdom von Huminiecki, Lukasz, Goldovsky, Leon, Freilich, Shiri, Moustakas, Aristidis, Ouzounis, Christos, Heldin, Carl-Henrik

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Denoising inferred functional association networks obtained by gene fusion analysis von Kamburov, Atanas, Goldovsky, Leon, Freilich, Shiri, Kapazoglou, Aliki, Kunin, Victor, Enright, Anton J, Tsaftaris, Athanasios, Ouzounis, Christos A

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Stratification of co-evolving genomic groups using ranked phylogenetic profiles von Freilich, Shiri, Goldovsky, Leon, Gottlieb, Assaf, Blanc, Eric, Tsoka, Sophia, Ouzounis, Christos A

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Metabolic innovations towards the human lineage von Freilich, Shiri, Goldovsky, Leon, Ouzounis, Christos A, Thornton, Janet M

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Expansion of the BioCyc collection of pathway/genome databases to 160 genomes von Karp, Peter D., Ouzounis, Christos A., Moore-Kochlacs, Caroline, Goldovsky, Leon, Kaipa, Pallavi, Ahrén, Dag, Tsoka, Sophia, Darzentas, Nikos, Kunin, Victor, López-Bigas, Núria

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A minimal estimate for the gene content of the last universal common ancestor—exobiology from a terrestrial perspective von Ouzounis, Christos A., Kunin, Victor, Darzentas, Nikos, Goldovsky, Leon

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Measuring genome conservation across taxa: divided strains and united kingdoms von Kunin, Victor, Ahren, Dag, Goldovsky, Leon, Janssen, Paul, Ouzounis, Christos A.

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Genome coverage, literally speaking. The challenge of annotating 200 genomes with 4 million publications von Janssen, Paul, Goldovsky, Leon, Kunin, Victor, Darzentas, Nikos, Ouzounis, Christos A

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Science communication media for scientists and the public von Darzentas, Nikos, Goldovsky, Leon, Ouzounis, Christos A., Karapiperis, Kleanthis, Karapiperis, Christos

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MagicMatch—cross-referencing sequence identifiers across databases von Smith, Mike, Kunin, Victor, Goldovsky, Leon, Enright, Anton J., Ouzounis, Christos A.

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CORRIE: enzyme sequence annotation with confidence estimates von Audit, Benjamin, Levy, Emmanuel D, Gilks, Wally R, Goldovsky, Leon, Ouzounis, Christos A

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COmplete GENome Tracking (COGENT): a flexible data environment for computational genomics von Janssen, Paul, Enright, Anton J., Audit, Benjamin, Cases, Ildefonso, Goldovsky, Leon, Harte, Nicola, Kunin, Victor, Ouzounis, Christos A.

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CoGenT++: an extensive and extensible data environment for computational genomics von Goldovsky, Leon, Janssen, Paul, Ahrén, Dag, Audit, Benjamin, Cases, Ildefonso, Darzentas, Nikos, Enright, Anton J., López-Bigas, Núria, Peregrin-Alvarez, José M., Smith, Mike, Tsoka, Sophia, Kunin, Victor, Ouzounis, Christos A.

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Genome coverage, literally speaking von Janssen, Paul, Goldovsky, Leon, Kunin, Victor, Darzentas, Nikos, Ouzounis, Christos A.

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Relating tissue specialization to the differentiation of expression of singleton and duplicate mouse proteins von Freilich, Shiri, Massingham, Tim, Blanc, Eric, Goldovsky, Leon, Thornton, Janet M

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Beyond 100 genomes von Janssen, Paul, Audit, Benjamin, Cases, Ildefonso, Darzentas, Nikos, Goldovsky, Leon, Kunin, Victor, Lopez-Bigas, Nuria, Peregrin-Alvarez, José Manuel, Pereira-Leal, José B, Tsoka, Sophia, Ouzounis, Christos A

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Expression breadth versus the number of duplicate pairs in the preMD, postMD and metazoan-specific subsets von Shiri Freilich, Massingham, Tim, Blanc, Eric, Goldovsky, Leon, Thornton, Janet M

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Average cumulative expression coverage in bins of protein families, ordered by size of family von Shiri Freilich, Massingham, Tim, Blanc, Eric, Goldovsky, Leon, Thornton, Janet M

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