A harmonized meta-knowledgebase of clinical interpretations of somatic genomic variants in cancer von Wagner, Alex H., Walsh, Brian, Mayfield, Georgia, Tamborero, David, Sonkin, Dmitriy, Krysiak, Kilannin, Deu-Pons, Jordi, Duren, Ryan P., Gao, Jianjiong, McMurry, Julie, Patterson, Sara, del Vecchio Fitz, Catherine, Pitel, Beth A., Sezerman, Ozman U., Ellrott, Kyle, Warner, Jeremy L., Rieke, Damian T., Aittokallio, Tero, Cerami, Ethan, Ritter, Deborah I., Schriml, Lynn M., Freimuth, Robert R., Haendel, Melissa, Raca, Gordana, Madhavan, Subha, Baudis, Michael, Beckmann, Jacques S., Dienstmann, Rodrigo, Chakravarty, Debyani, Li, Xuan Shirley, Mockus, Susan, Elemento, Olivier, Schultz, Nikolaus, Lopez-Bigas, Nuria, Lawler, Mark, Goecks, Jeremy, Griffith, Malachi, Griffith, Obi L., Margolin, Adam A.

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The Human Tumor Atlas Network: Charting Tumor Transitions across Space and Time at Single-Cell Resolution von Rozenblatt-Rosen, O, Regev, A, Oberdoerffer, P, Nawy, T, Hupalowska, A, Rood, JE, Ashenberg, O, Cerami, E, Coffey, RJ, Demir, E, Ding, L, Esplin, ED, Ford, JM, Goecks, J, Ghosh, S, Gray, JW, Guinney, J, Hanlon, SE, Hughes, SK, Hwang, ES, Iacobuzio-Donahue, CA, Jané-Valbuena, J, Johnson, BE, Lau, KS, Lively, T, Mazzilli, SA, Pe'er, D, Santagata, S, Shalek, AK, Schapiro, D, Snyder, MP, Sorger, PK, Spira, AE, Srivastava, S, Tan, K, West, RB, Human Tumor Atlas Network

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The Galaxy Track Browser: Transforming the genome browser from visualization tool to analysis tool von Goecks, J., Kanwei Li, Clements, D., Taylor, J.

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Lessons learned from Galaxy, a Web-based platform for high-throughput genomic analyses von Goecks, J., Nekrutenko, A., Taylor, J.

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MCMICRO: a scalable, modular image-processing pipeline for multiplexed tissue imaging von Schapiro, Denis, Sokolov, Artem, Yapp, Clarence, Chen, Yu-An, Muhlich, Jeremy L., Hess, Joshua, Creason, Allison L., Nirmal, Ajit J., Baker, Gregory J., Nariya, Maulik K., Lin, Jia-Ren, Maliga, Zoltan, Jacobson, Connor A., Hodgman, Matthew W., Ruokonen, Juha, Farhi, Samouil L., Abbondanza, Domenic, McKinley, Eliot T., Persson, Daniel, Betts, Courtney, Sivagnanam, Shamilene, Regev, Aviv, Goecks, Jeremy, Coffey, Robert J., Coussens, Lisa M., Santagata, Sandro, Sorger, Peter K.

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The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update von Afgan, Enis, Nekrutenko, Anton, Grüning, Bjórn A, Blankenberg, Daniel, Goecks, Jeremy, Schatz, Michael C, Ostrovsky, Alexander E, Mahmoud, Alexandru, Lonie, Andrew J, Syme, Anna, Fouilloux, Anne, Bretaudeau, Anthony, Kumar, Anup, Eschenlauer, Arthur C, DeSanto, Assunta D, Guerler, Aysam, Serrano-Solano, Beatriz, Batut, Bérénice, Grüning, Björn A, Langhorst, Bradley W, Carr, Bridget, Raubenolt, Bryan A, Hyde, Cameron J, Bromhead, Catherine J, Barnett, Christopher B, Royaux, Coline, Gallardo, Cristóbal, Fornika, Daniel J, Baker, Dannon, Bouvier, Dave, Clements, Dave, de Lima Morais, David A, Tabernero, David Lopez, Lariviere, Delphine, Nasr, Engy, Zambelli, Federico, Heyl, Florian, Psomopoulos, Fotis, Coppens, Frederik, Price, Gareth R, Cuccuru, Gianmauro, Corguillé, Gildas Le, Von Kuster, Greg, Akbulut, Gulsum Gudukbay, Rasche, Helena, Hotz, Hans-Rudolf, Eguinoa, Ignacio, Makunin, Igor, Ranawaka, Isuru J, Taylor, James P, Joshi, Jayadev, Hillman-Jackson, Jennifer, Chilton, John M, Kamali, Kaivan, Suderman, Keith, Poterlowicz, Krzysztof, Yvan, Le Bras, Lopez-Delisle, Lucille, Sargent, Luke, Bassetti, Madeline E, Tangaro, Marco Antonio, van den Beek, Marius, Čech, Martin, Bernt, Matthias, Fahrner, Matthias, Tekman, Mehmet, Föll, Melanie C, Crusoe, Michael R, Roncoroni, Miguel, Kucher, Natalie, Coraor, Nate, Stoler, Nicholas, Rhodes, Nick, Soranzo, Nicola, Pinter, Niko, Goonasekera, Nuwan A, Moreno, Pablo A, Videm, Pavankumar, Melanie, Petera, Mandreoli, Pietro, Jagtap, Pratik D, Gu, Qiang, Weber, Ralf J M, Lazarus, Ross, Vorderman, Ruben H P, Hiltemann, Saskia, Golitsynskiy, Sergey, Garg, Shilpa, Bray, Simon A, Gladman, Simon L, Leo, Simone, Mehta, Subina P, Griffin, Timothy J, Jalili, Vahid, Yves, Vandenbrouck, Wen, Victor, Nagampalli, Vijay K, Bacon, Wendi A, de Koning, Willem, Maier, Wolfgang

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Integrative approach reveals composition of endoparasitoid wasp venoms von Goecks, Jeremy, Mortimer, Nathan T, Mobley, James A, Bowersock, Gregory J, Taylor, James, Schlenke, Todd A

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Parasitoid wasp venom SERCA regulates Drosophila calcium levels and inhibits cellular immunity von Mortimer, Nathan T., Goecks, Jeremy, Kacsoh, Balint Z., Mobley, James A., Bowersock, Gregory J., Taylor, James, Schlenke, Todd A.

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Multiomics analysis of serial PARP inhibitor treated metastatic TNBC inform on rational combination therapies von Labrie, Marilyne, Li, Allen, Creason, Allison, Betts, Courtney, Keck, Jamie, Johnson, Brett, Sivagnanam, Shamilene, Boniface, Christopher, Ma, Hongli, Blucher, Aurora, Chang, Young Hwan, Chin, Koei, Vuky, Jacqueline, Guimaraes, Alexander R., Downey, Molly, Lim, Jeong Youn, Gao, Lina, Siex, Kiara, Parmar, Swapnil, Kolodzie, Annette, Spellman, Paul T., Goecks, Jeremy, Coussens, Lisa M., Corless, Christopher L., Bergan, Raymond, Gray, Joe W., Mills, Gordon B., Mitri, Zahi I.

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MITI minimum information guidelines for highly multiplexed tissue images von Schapiro, Denis, Yapp, Clarence, Sokolov, Artem, Reynolds, Sheila M., Chen, Yu-An, Sudar, Damir, Xie, Yubin, Muhlich, Jeremy, Arias-Camison, Raquel, Arena, Sarah, Taylor, Adam J., Nikolov, Milen, Tyler, Madison, Lin, Jia-Ren, Burlingame, Erik A., Chang, Young H., Farhi, Samouil L., Thorsson, Vésteinn, Venkatamohan, Nithya, Drewes, Julia L., Pe’er, Dana, Gutman, David A., Herrmann, Markus D., Gehlenborg, Nils, Bankhead, Peter, Roland, Joseph T., Herndon, John M., Snyder, Michael P., Angelo, Michael, Nolan, Garry, Swedlow, Jason R., Schultz, Nikolaus, Merrick, Daniel T., Mazzili, Sarah A., Cerami, Ethan, Rodig, Scott J., Santagata, Sandro, Sorger, Peter K.

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The Galaxy platform for accessible, reproducible, and collaborative data analyses: 2024 update von Abueg, Linelle Ann L, Afgan, Enis, Allart, Olivier, Awan, Ahmed H, Bacon, Wendi A, Baker, Dannon, Bassetti, Madeline, Batut, Bérénice, Bernt, Matthias, Blankenberg, Daniel, Bombarely, Aureliano, Bretaudeau, Anthony, Bromhead, Catherine J, Burke, Melissa L, Capon, Patrick K, Čech, Martin, Chavero-Díez, María, Chilton, John M, Collins, Tyler J, Coppens, Frederik, Coraor, Nate, Cuccuru, Gianmauro, Cumbo, Fabio, Davis, John, De Geest, Paul F, de Koning, Willem, Demko, Martin, DeSanto, Assunta, Begines, José Manuel Domínguez, Doyle, Maria A, Droesbeke, Bert, Erxleben-Eggenhofer, Anika, Föll, Melanie C, Formenti, Giulio, Fouilloux, Anne, Gangazhe, Rendani, Genthon, Tanguy, Goecks, Jeremy, Beltran, Alejandra N Gonzalez, Goonasekera, Nuwan A, Goué, Nadia, Griffin, Timothy J, Grüning, Björn A, Guerler, Aysam, Gundersen, Sveinung, Gustafsson, Ove Johan Ragnar, Hall, Christina, Harrop, Thomas W, Hecht, Helge, Heidari, Alireza, Heisner, Tillman, Heyl, Florian, Hiltemann, Saskia, Hotz, Hans-Rudolf, Hyde, Cameron J, Jagtap, Pratik D, Jakiela, Julia, Johnson, James E, Joshi, Jayadev, Jossé, Marie, Jum’ah, Khaled, Kalaš, Matúš, Kamieniecka, Katarzyna, Kayikcioglu, Tunc, Konkol, Markus, Kostrykin, Leonid, Kucher, Natalie, Kumar, Anup, Kuntz, Mira, Lariviere, Delphine, Lazarus, Ross, Bras, Yvan Le, Corguillé, Gildas Le, Lee, Justin, Leo, Simone, Liborio, Leandro, Libouban, Romane, Tabernero, David López, Lopez-Delisle, Lucille, Los, Laila S, Mahmoud, Alexandru, Makunin, Igor, Marin, Pierre, Mehta, Subina, Mok, Winnie, Moreno, Pablo A, Morier-Genoud, François, Mosher, Stephen, Müller, Teresa, Nasr, Engy, Nekrutenko, Anton, Nelson, Tiffanie M, Oba, Asime J, Ostrovsky, Alexander, Polunina, Polina V, Poterlowicz, Krzysztof, Price, Elliott J, Price, Gareth R, Rasche, Helena, Raubenolt, Bryan

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A quick guide for building a successful bioinformatics community von Budd, Aidan, Corpas, Manuel, Brazas, Michelle D, Fuller, Jonathan C, Goecks, Jeremy, Mulder, Nicola J, Michaut, Magali, Ouellette, B F Francis, Pawlik, Aleksandra, Blomberg, Niklas

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Nonuniform cardiac denervation observed by 11C-meta-hydroxyephedrine PET in 6-OHDA-treated monkeys von Joers, Valerie, Seneczko, Kailie, Goecks, Nichole C, Kamp, Timothy J, Hacker, Timothy A, Brunner, Kevin G, Engle, Jonathan W, Barnhart, Todd E, Nickles, R Jerome, Holden, James E, Emborg, Marina E

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Dietary and flight energetic adaptations in a salivary gland transcriptome of an insectivorous bat von Phillips, Carleton J, Phillips, Caleb D, Goecks, Jeremy, Lessa, Enrique P, Sotero-Caio, Cibele G, Tandler, Bernard, Gannon, Michael R, Baker, Robert J

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The Bioinformatics Open Source Conference (BOSC) 2013 von Harris, Nomi L, Cock, Peter J A, Chapman, Brad A, Goecks, Jeremy, Hotz, Hans-Rudolf, Lapp, Hilmar

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A Quick Guide for Building a Successful Bioinformatics Community: e1003972 von Budd, Aidan, Corpas, Manuel, Brazas, Michelle D, Fuller, Jonathan C, Goecks, Jeremy, Mulder, Nicola J, Michaut, Magali, Ouellette, B FFrancis, Pawlik, Aleksandra, Blomberg, Niklas

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Nonuniform Cardiac Denervation Observed by .sup.11C-meta-Hydroxyephedrine PET in 6-OHDA-Treated Monkeys von Joers, Valerie, Seneczko, Kailie, Goecks, Nichole C, Kamp, Timothy J, Hacker, Timothy A, Brunner, Kevin G, Engle, Jonathan W, Barnhart, Todd E, Nickles, R. Jerome, Holden, James E, Emborg, Marina E

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Learning Flight Control Systems from Human Demonstrations and Real-Time Uncertainty-Informed Interventions von Ganesh, Prashant, Ramos, J. Humberto, Goecks, Vinicius G., Paquet, Jared, Longmire, Matthew, Waytowich, Nicholas R., Brink, Kevin

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Integrative Approach Reveals Composition of Endoparasitoid Wasp Venoms. e64125 von Goecks, Jeremy, Mortimer, Nathan T, Mobley, James A, Bowersock, Gregory J, Taylor, James, Schlenke, Todd A

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Learning Flight Control Systems from Human Demonstrations and Real-Time Uncertainty-Informed Interventions von Ganesh, Prashant, Ramos, J. Humberto, Goecks, Vinicius G, Paquet, Jared, Longmire, Matthew, Waytowich, Nicholas R, Brink, Kevin

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