Robust analysis of prokaryotic pangenome gene gain and loss rates with Panstripe von Tonkin-Hill, Gerry, Gladstone, Rebecca A, Pöntinen, Anna K, Arredondo-Alonso, Sergio, Bentley, Stephen D, Corander, Jukka

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Changes in serotype prevalence of Streptococcus pneumoniae in Southampton, UK between 2006 and 2018 von Cleary, David W., Jones, Jessica, Gladstone, Rebecca A., Osman, Karen L., Devine, Vanessa T., Jefferies, Johanna M., Bentley, Stephen D., Faust, Saul N., Clarke, Stuart C.

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Strong pathogen competition in neonatal gut colonisation von Mäklin, Tommi, Thorpe, Harry A., Pöntinen, Anna K., Gladstone, Rebecca A., Shao, Yan, Pesonen, Maiju, McNally, Alan, Johnsen, Pål J., Samuelsen, Ørjan, Lawley, Trevor D., Honkela, Antti, Corander, Jukka

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Deep sequencing of Escherichia coli exposes colonisation diversity and impact of antibiotics in Punjab, Pakistan von Khawaja, Tamim, Mäklin, Tommi, Kallonen, Teemu, Gladstone, Rebecca A., Pöntinen, Anna K., Mero, Sointu, Thorpe, Harry A., Samuelsen, Ørjan, Parkhill, Julian, Izhar, Mateen, Akhtar, M. Waheed, Corander, Jukka, Kantele, Anu

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Evolutionary and functional history of the Escherichia coli K1 capsule von Arredondo-Alonso, Sergio, Blundell-Hunter, George, Fu, Zuyi, Gladstone, Rebecca A., Fillol-Salom, Alfred, Loraine, Jessica, Cloutman-Green, Elaine, Johnsen, Pål J., Samuelsen, Ørjan, Pöntinen, Anna K., Cléon, François, Chavez-Bueno, Susana, De la Cruz, Miguel A., Ares, Miguel A., Vongsouvath, Manivanh, Chmielarczyk, Agnieszka, Horner, Carolyne, Klein, Nigel, McNally, Alan, Reis, Joice N., Penadés, José R., Thomson, Nicholas R., Corander, Jukka, Taylor, Peter W., McCarthy, Alex J.

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Using genomics to examine the persistence of Streptococcus pneumoniae serotype 19A in Ireland and the emergence of a sub-clade associated with vaccine failures von Corcoran, M., Mereckiene, J., Cotter, S., Murchan, S., Lo, S.W., McGee, L., Breiman, RF, Cunney, R., Humphreys, H., Bentley, S.D., Gladstone, R.A.

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Inferring the heritability of bacterial traits in the era of machine learning von Mai, T Tien, Lees, John A, Gladstone, Rebecca A, Corander, Jukka

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Strong pathogen competition in neonatal gut colonisation von Mäklin, Tommi, Thorpe, Harry Arthur Frank Wright, Pöntinen, Anna Kaarina, Gladstone, Rebecca Ashley, Shao, Yan, Pesonen, Maiju, McNally, Alan, Johnsen, Pål Jarle, Samuelsen, Ørjan, Lawley, Trevor D, Honkela, Antti, Corander, Jukka

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A high-throughput multiplexing and selection strategy to complete bacterial genomes von Arredondo-Alonso, Sergio, Pöntinen, Anna K, Cléon, François, Gladstone, Rebecca A, Schürch, Anita C, Johnsen, Pål J, Samuelsen, Ørjan, Corander, Jukka

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Evolutionary and functional history of the Escherichia coli K1 capsule von Alonso, Sergio Arredondo, Blundell-Hunter, George, Fu, Zuyi, Gladstone, Rebecca Ashley, Fillol-Salom, Alfred, Loraine, Jessica, Cloutman-Green, Elaine, Johnsen, Pål Jarle, Samuelsen, Ørjan, Pöntinen, Anna Kaarina, Cleon, Francois Pierre Alexandre, Chavez-Bueno, Susana, De la Cruz, Miguel A, Ares, Miguel A, Vongsouvath, Manivanh, Chmielarczyk, Agnieszka, Horner, Carolyne, Klein, Nigel, McNally, Alan, Reis, Joice N, Penadés, José R, Thomson, Nicholas R, Corander, Jukka, Taylor, Peter W, McCarthy, Alex J

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Comparative Genomics of Disease and Carriage Serotype 1 Pneumococci von Chaguza, Chrispin, Ebruke, Chinelo, Senghore, Madikay, Lo, Stephanie W., Tientcheu, Peggy-Estelle, Gladstone, Rebecca A., Tonkin-Hill, Gerry, Cornick, Jennifer E., Yang, Marie, Worwui, Archibald, McGee, Lesley, Breiman, Robert F., Klugman, Keith P., Kadioglu, Aras, Everett, Dean B., Mackenzie, Grant, Croucher, Nicholas J., Roca, Anna, Kwambana-Adams, Brenda A., Antonio, Martin, Bentley, Stephen D.

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Mge-cluster: a reference-free approach for typing bacterial plasmids von Arredondo-Alonso, Sergio, Gladstone, Rebecca A, Pöntinen, Anna K, Gama, João A, Schürch, Anita C, Lanza, Val F, Johnsen, Pål Jarle, Samuelsen, Ørjan, Tonkin-Hill, Gerry, Corander, Jukka

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International links between Streptococcus pneumoniae vaccine serotype 4 sequence type (ST) 801 in Northern European shipyard outbreaks of invasive pneumococcal disease von Gladstone, Rebecca Ashley, Siira, Lotta, Brynildsrud, Ola Brønstad, Vestrheim, Didrik Frimann, Turner, Paul, Clarke, S.C., Srifuengfung, S., Ford, R., Lehmann, D., Egorova, E., Voropaeva, E., Haraldsson, G., Kristinsson, K.G., McGee, L., Breiman, Robert F., Bentley, S.D., Sheppard, Carmen L., Fry, N.K., Corander, Jukka, Toropainen, M., Steens, Anneke

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Modulation of multidrug-resistant clone success in Escherichia coli populations: a longitudinal, multi-country, genomic and antibiotic usage cohort study von Pöntinen, Anna K, Gladstone, Rebecca A, Pesonen, Henri, Pesonen, Maiju, Cléon, François, Parcell, Benjamin J, Kallonen, Teemu, Simonsen, Gunnar Skov, Croucher, Nicholas J, McNally, Alan, Parkhill, Julian, Johnsen, Pål J, Samuelsen, Ørjan, Corander, Jukka

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Key features of pneumococcal isolates recovered in Central and Northwestern Russia in 2011–2018 determined through whole-genome sequencing von Egorova, Ekaterina, Kumar, Narender, Gladstone, Rebecca A., Urban, Yulia, Voropaeva, Elena, Chaplin, A.V., Rumiantseva, Elena, Svistunova, T. S., Hawkins, Paulina A., Klugman, Keith P., Breiman, Robert F., McGee, Lesley, Bentley, Stephen D., Lo, Stephanie W.

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Modulation of multidrug-resistant clone success in Escherichia coli populations: a longitudinal, multi-country, genomic and antibiotic usage cohort study von Pöntinen, Anna Kaarina, Gladstone, Rebecca Ashley, Pesonen, Henri, Pesonen, Maiju, Cleon, Francois Pierre Alexandre, Parcell, Benjamin J, Kallonen, Teemu, Simonsen, Gunnar Skov, Croucher, Nicholas J, McNally, Alan, Parkhill, Julian, Johnsen, Pål Jarle, Samuelsen, Ørjan, Corander, Jukka

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Genetic background of Cambodian pneumococcal carriage isolates following pneumococcal conjugate vaccine 13 von Belman, Sophie, Soeng, Sona, Soputhy, Chansovannara, Gladstone, Rebecca, Hawkins, Paulina A, Breiman, Robert F, McGee, Lesley, Bentley, Stephen D, Lo, Stephanie W, Turner, Paul

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A high-throughput multiplexing and selection strategy to complete bacterial genomes von Alonso, Sergio Arredondo, Pöntinen, Anna K, Cleon, Francois Pierre Alexandre, Gladstone, Rebecca Ashley, Schürch, Anita C, Johnsen, Pål Jarle, Samuelsen, Ørjan, Corander, Jukka

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Emergence and dissemination of antimicrobial resistance in Escherichia coli causing bloodstream infections in Norway in 2002-17: a nationwide, longitudinal, microbial population ge... von Olliaro, P., Torreele, E., Vaillant, M.

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Emergence and dissemination of antimicrobial resistance in Escherichia coli causing bloodstream infections in Norway in 2002–17: a nationwide, longitudinal, microbial population ge... von Gladstone, Rebecca Ashley, McNally, Alan, Pöntinen, Anna Kaarina, Tonkin-Hill, Gerry, Lees, John A., Skytén, Kusti Onni, Cléon, Francois Pierre Alexandre, Christensen, Martin Owczarek Korsner, Haldorsen, Bjørg, Bye, Kristina K., Gammelsrud, Karianne Wiger, Hjetland, Reidar, Kümmel, Angela, Larsen, Hege, Lindemann, Paul Christoffer, Löhr, Iren Høyland, Marvik, Åshild, Nilsen, Einar, Noer, Marie Therese, Simonsen, Gunnar Skov, Steinbakk, Martin, Tofteland, Ståle, Vattøy, Marit, Bentley, Stephen D., Croucher, Nicholas J., Parkhill, Julian, Johnsen, Pål Jarle, Samuelsen, Ørjan, Corander, Jukka

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