Genomics Virtual Laboratory: A Practical Bioinformatics Workbench for the Cloud von Afgan, Enis, Sloggett, Clare, Goonasekera, Nuwan, Makunin, Igor, Benson, Derek, Crowe, Mark, Gladman, Simon, Kowsar, Yousef, Pheasant, Michael, Horst, Ron, Lonie, Andrew

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Emergence of High-Level Colistin Resistance in an Acinetobacter baumannii Clinical Isolate Mediated by Inactivation of the Global Regulator H-NS von Deveson Lucas, Deanna, Crane, Bethany, Wright, Amy, Han, Mei-Ling, Moffatt, Jennifer, Bulach, Dieter, Gladman, Simon L, Powell, David, Aranda, Jesus, Seemann, Torsten, Machado, Diana, Pacheco, Teresa, Marques, Teresa, Viveiros, Miguel, Nation, Roger, Li, Jian, Harper, Marina, Boyce, John D

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Comparative Analysis of the First Complete Enterococcus faecium Genome von Lam, Margaret M. C, Seemann, Torsten, Bulach, Dieter M, Gladman, Simon L, Chen, Honglei, Haring, Volker, Moore, Robert J, Ballard, Susan, Grayson, M. Lindsay, Johnson, Paul D. R, Howden, Benjamin P, Stinear, Timothy P

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No more business as usual: Agile and effective responses to emerging pathogen threats require open data and open analytics von Baker, Dannon, van den Beek, Marius, Blankenberg, Daniel, Bouvier, Dave, Chilton, John, Coraor, Nate, Coppens, Frederik, Eguinoa, Ignacio, Gladman, Simon, Gruening, Bjoern, Keener, Nicholas, Lariviere, Delphine, Lonie, Andrew, Pond, Sergei Kosakovsky, Maier, Wolfgang, Nekrutenko, Anton, Taylor, James, Weaver, Steven

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Porphyromonas gingivalis Uses Specific Domain Rearrangements and Allelic Exchange to Generate Diversity in Surface Virulence Factors von Dashper, Stuart G, Mitchell, Helen L, Seers, Christine A, Gladman, Simon L, Seemann, Torsten, Bulach, Dieter M, Chandry, P Scott, Cross, Keith J, Cleal, Steven M, Reynolds, Eric C

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Comparative Genomic Analysis of Asian Haemorrhagic Septicaemia-Associated Strains of Pasteurella multocida Identifies More than 90 Haemorrhagic Septicaemia-Specific Genes von Moustafa, Ahmed M, Seemann, Torsten, Gladman, Simon, Adler, Ben, Harper, Marina, Boyce, John D, Bennett, Mark D

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A Genomic Island in Salmonella enterica ssp. salamae provides new insights on the genealogy of the locus of enterocyte effacement von Chandry, P Scott, Gladman, Simon, Moore, Sean C, Seemann, Torsten, Crandall, Keith A, Fegan, Narelle

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Best practice data life cycle approaches for the life sciences [version 2; peer review: 2 approved] von Griffin, Philippa C, Khadake, Jyoti, LeMay, Kate S, Lewis, Suzanna E, Orchard, Sandra, Pask, Andrew, Pope, Bernard, Roessner, Ute, Russell, Keith, Seemann, Torsten, Treloar, Andrew, Tyagi, Sonika, Christiansen, Jeffrey H, Dayalan, Saravanan, Gladman, Simon, Hangartner, Sandra B, Hayden, Helen L, Ho, William W.H, Keeble-Gagnère, Gabriel, Korhonen, Pasi K, Neish, Peter, Prestes, Priscilla R, Richardson, Mark F, Watson-Haigh, Nathan S, Wyres, Kelly L, Young, Neil D, Schneider, Maria Victoria

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Large tandem chromosome expansions facilitate niche adaptation during persistent infection with drug-resistant Staphylococcus aureus von Gao, Wei, Monk, Ian R, Tobias, Nicholas J, Gladman, Simon L, Seemann, Torsten, Stinear, Timothy P, Howden, Benjamin P

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Bioconda: sustainable and comprehensive software distribution for the life sciences von Grüning, Björn, Dale, Ryan, Sjödin, Andreas, Chapman, Brad A., Rowe, Jillian, Tomkins-Tinch, Christopher H., Valieris, Renan, Köster, Johannes

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Ready-to-use public infrastructure for global SARS-CoV-2 monitoring von Maier, Wolfgang, Bray, Simon, van den Beek, Marius, Bouvier, Dave, Coraor, Nathan, Miladi, Milad, Singh, Babita, De Argila, Jordi Rambla, Baker, Dannon, Roach, Nathan, Gladman, Simon, Coppens, Frederik, Martin, Darren P., Lonie, Andrew, Grüning, Björn, Kosakovsky Pond, Sergei L., Nekrutenko, Anton

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Galaxy Training: A powerful framework for teaching von Hiltemann, Saskia, Rasche, Helena, Gladman, Simon, Hotz, Hans-Rudolf, Larivière, Delphine, Blankenberg, Daniel, Jagtap, Pratik D, Wollmann, Thomas, Bretaudeau, Anthony, Goué, Nadia, Griffin, Timothy J, Royaux, Coline, Le Bras, Yvan, Mehta, Subina, Syme, Anna, Coppens, Frederik, Droesbeke, Bert, Soranzo, Nicola, Bacon, Wendi, Psomopoulos, Fotis, Gallardo-Alba, Cristóbal, Davis, John, Föll, Melanie Christine, Fahrner, Matthias, Doyle, Maria A, Serrano-Solano, Beatriz, Fouilloux, Anne Claire, van Heusden, Peter, Maier, Wolfgang, Clements, Dave, Heyl, Florian, Grüning, Björn, Batut, Bérénice

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computational model for temperature and sterility distributions in a pilot-scale high-pressure high-temperature process von Knoerzer, Kai, Juliano, Pablo, Gladman, Simon, Versteeg, Cornelis, Fryer, Peter J

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No more business as usual : agile and effective responses to emerging pathogen threats require open data and open analytics von Baker, Dannon, van den Beek, Marius, Blankenberg, Daniel, Bouvier, Dave, Chilton, John, Coraor, Nate, Coppens, Frederik, Eguinoa, Ignacio, Gladman, Simon, Grüning, Björn, Keener, Nicholas, Larivière, Delphine, Lonie, Andrew, Kosakovsky Pond, Sergei, Maier, Wolfgang, Nekrutenko, Anton, Taylor, James, Weaver, Steven

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Galaxy Training : a powerful framework for teaching von Hiltemann, Saskia, Rasche, Helena, Gladman, Simon, Hotz, Hans-Rudolf, Larivière, Delphine, Blankenberg, Daniel, Jagtap, Pratik D, Wollmann, Thomas, Bretaudeau, Anthony, Goué, Nadia, Griffin, Timothy J, Royaux, Coline, Le Bras, Yvan, Mehta, Subina, Syme, Anna, Coppens, Frederik, Droesbeke, Bert, Soranzo, Nicola, Bacon, Wendi, Psomopoulos, Fotis, Gallardo-Alba, Cristóbal, Davis, John, Föll, Melanie Christine, Fahrner, Matthias, Doyle, Maria A, Serrano-Solano, Beatriz, Fouilloux, Anne Claire, van Heusden, Peter, Maier, Wolfgang, Clements, Dave, Heyl, Florian, on behalf of the Galaxy Training Network, [ missing ], Grüning, Björn, Batut, Bérénice

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The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update von Afgan, Enis, Nekrutenko, Anton, Grüning, Bjórn, Blankenberg, Daniel, Goecks, Jeremy, Schatz, Michael, Ostrovsky, Alexander, Mahmoud, Alexandru, Lonie, Andrew, Syme, Anna, Fouilloux, Anne, Bretaudeau, Anthony, Kumar, Anup, Eschenlauer, Arthur, Desanto, Assunta, Guerler, Aysam, Serrano-Solano, Beatriz, Batut, Bérénice, Grüning, Björn, Langhorst, Bradley, Carr, Bridget, Raubenolt, Bryan, Hyde, Cameron, Bromhead, Catherine, Barnett, Christopher, Royaux, Coline, Gallardo, Cristóbal, Fornika, Daniel, Baker, Dannon, Bouvier, Dave, Clements, Dave, de Lima Morais, David, Tabernero, David Lopez, Lariviere, Delphine, Nasr, Engy, Zambelli, Federico, Heyl, Florian, Psomopoulos, Fotis, Coppens, Frederik, Price, Gareth, Cuccuru, Gianmauro, Corguillé, Gildas Le, von Kuster, Greg, Akbulut, Gulsum Gudukbay, Rasche, Helena, Hotz, Hans-Rudolf, Eguinoa, Ignacio, Makunin, Igor, Ranawaka, Isuru, Taylor, James, Joshi, Jayadev, Hillman-Jackson, Jennifer, Chilton, John, Kamali, Kaivan, Suderman, Keith, Poterlowicz, Krzysztof, Le Bras, Yvan, Lopez-Delisle, Lucille, Sargent, Luke, Bassetti, Madeline, Tangaro, Marco Antonio, van den Beek, Marius, Čech, Martin, Bernt, Matthias, Fahrner, Matthias, Tekman, Mehmet, Föll, Melanie, Pétéra, Mélanie, Crusoe, Michael, Roncoroni, Miguel, Kucher, Natalie, Coraor, Nate, Stoler, Nicholas, Rhodes, Nick, Soranzo, Nicola, Pinter, Niko, Goonasekera, Nuwan, Moreno, Pablo, Videm, Pavankumar, Mandreoli, Pietro, Jagtap, Pratik, Gu, Qiang, Weber, Ralf, Lazarus, Ross, Vorderman, Ruben, Hiltemann, Saskia, Golitsynskiy, Sergey, Garg, Shilpa, Bray, Simon, Gladman, Simon, Leo, Simone, Mehta, Subina, Griffin, Timothy, Jalili, Vahid, Yves, Vandenbrouck, Wen, Victor, Nagampalli, Vijay, Bacon, Wendi, de Koning, Willem, Maier, Wolfgang

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Training Infrastructure as a Service von Rasche, Helena, Hyde, Cameron, Davis, John, Gladman, Simon, Coraor, Nate, Bretaudeau, Anthony, Cuccuru, Gianmauro, Bacon, Wendi, Serrano-Solano, Beatriz, Hillman-Jackson, Jennifer, Hiltemann, Saskia, Zhou, Miaomiao, Grüning, Björn, Stubbs, Andrew

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Establishing a distributed national research infrastructure providing bioinformatics support to life science researchers in Australia von Schneider, Maria Victoria, Griffin, Philippa C, Tyagi, Sonika, Flannery, Madison, Dayalan, Saravanan, Gladman, Simon, Watson-Haigh, Nathan, Bayer, Philipp E, Charleston, Michael, Cooke, Ira, Cook, Rob, Edwards, Richard J, Edwards, David, Gorse, Dominique, McConville, Malcolm, Powell, David, Wilkins, Marc R, Lonie, Andrew

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Community-Driven Data Analysis Training for Biology von Batut, Bérénice, Hiltemann, Saskia, Bagnacani, Andrea, Baker, Dannon, Bhardwaj, Vivek, Blank, Clemens, Bretaudeau, Anthony, Brillet-Guéguen, Loraine, Čech, Martin, Chilton, John, Clements, Dave, Doppelt-Azeroual, Olivia, Erxleben, Anika, Freeberg, Mallory Ann, Gladman, Simon, Hoogstrate, Youri, Hotz, Hans-Rudolf, Houwaart, Torsten, Jagtap, Pratik, Larivière, Delphine, Le Corguillé, Gildas, Manke, Thomas, Mareuil, Fabien, Ramírez, Fidel, Ryan, Devon, Sigloch, Florian Christoph, Soranzo, Nicola, Wolff, Joachim, Videm, Pavankumar, Wolfien, Markus, Wubuli, Aisanjiang, Yusuf, Dilmurat, Taylor, James, Backofen, Rolf, Nekrutenko, Anton, Grüning, Björn

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Using the local immune response from the natural buffalo host to generate an antibody fragment library that binds the early larval stages of Schistosoma japonicum von Hosking, Christopher G., Driguez, Patrick, McWilliam, Hamish E.G., Ilag, Leodevico L., Gladman, Simon, Li, Yuesheng, Piedrafita, David, McManus, Donald P., Meeusen, Els N.T., de Veer, Michael J.

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