The influence of caging, bedding, and diet on the composition of the microbiota in different regions of the mouse gut von Ericsson, Aaron C., Gagliardi, Jonalyn, Bouhan, Delia, Spollen, William G., Givan, Scott A., Franklin, Craig L.

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Genome-wide mapping of alternative splicing in Arabidopsis thaliana von Filichkin, Sergei A, Priest, Henry D, Givan, Scott A, Shen, Rongkun, Bryant, Douglas W, Fox, Samuel E, Wong, Weng-Keen, Mockler, Todd C

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High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes von Fahlgren, Noah, Howell, Miya D, Kasschau, Kristin D, Chapman, Elisabeth J, Sullivan, Christopher M, Cumbie, Jason S, Givan, Scott A, Law, Theresa F, Grant, Sarah R, Dangl, Jeffery L, Carrington, James C

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Expression of Arabidopsis MIRNA genes von Xie, Z, Allen, E, Fahlgren, N, Calamar, A, Givan, S.A, Carrington, J.C

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Gut Dysbiosis and Neurobehavioral Alterations in Rats Exposed to Silver Nanoparticles von Javurek, Angela B., Suresh, Dhananjay, Spollen, William G., Hart, Marcia L., Hansen, Sarah A., Ellersieck, Mark R., Bivens, Nathan J., Givan, Scott A., Upendran, Anandhi, Kannan, Raghuraman, Rosenfeld, Cheryl S.

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Genome-wide profiling and analysis of Arabidopsis siRNAs von Kasschau, Kristin D, Fahlgren, Noah, Chapman, Elisabeth J, Sullivan, Christopher M, Cumbie, Jason S, Givan, Scott A, Carrington, James C

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Network discovery pipeline elucidates conserved time-of-day-specific cis-regulatory modules von Michael, Todd P, Mockler, Todd C, Breton, Ghislain, McEntee, Connor, Byer, Amanda, Trout, Jonathan D, Hazen, Samuel P, Shen, Rongkun, Priest, Henry D, Sullivan, Christopher M, Givan, Scott A, Yanovsky, Marcelo, Hong, Fangxin, Kay, Steve A, Chory, Joanne

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MicroRNA Gene Evolution in Arabidopsis lyrata and Arabidopsis thaliana von Fahlgren, Noah, Jogdeo, Sanjuro, Kasschau, Kristin D, Sullivan, Christopher M, Chapman, Elisabeth J, Laubinger, Sascha, Smith, Lisa M, Dasenko, Mark, Givan, Scott A, Weigel, Detlef, Carrington, James C

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Genome-wide discovery and characterization of maize long non-coding RNAs von Li, Lin, Eichten, Steven R, Shimizu, Rena, Petsch, Katherine, Yeh, Cheng-Ting, Wu, Wei, Chettoor, Antony M, Givan, Scott A, Cole, Rex A, Fowler, John E, Evans, Matthew M S, Scanlon, Michael J, Yu, Jianming, Schnable, Patrick S, Timmermans, Marja C P, Springer, Nathan M, Muehlbauer, Gary J

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Prior metabolite extraction fully preserves RNAseq quality and enables integrative multi-'omics analysis of the liver metabolic response to viral infection von Madaj, Zachary B, Dahabieh, Michael S., Kamalumpundi, Vijayvardhan, Muhire, Brejnev, Pettinga, J., Siwicki, Rebecca A., Ellis, Abigail E., Isaguirre, Christine, Escobar Galvis, Martha L., DeCamp, Lisa, Jones, Russell G., Givan, Scott A., Adams, Marie, Sheldon, Ryan D.

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The novel cyst nematode effector protein 30D08 targets host nuclear functions to alter gene expression in feeding sites von Verma, Anju, Lee, Chris, Morriss, Stephanie, Odu, Fiona, Kenning, Charlotte, Rizzo, Nancy, Spollen, William G., Lin, Marriam, McRae, Amanda G., Givan, Scott A., Hewezi, Tarek, Hussey, Richard, Davis, Eric L., Baum, Thomas J., Mitchum, Melissa G.

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Short-Stalked Prosthecomicrobium hirschii Cells Have a Caulobacter-Like Cell Cycle von Williams, Michelle, Hoffman, Michelle D, Daniel, Jeremy J, Madren, Seth M, Dhroso, Andi, Korkin, Dmitry, Givan, Scott A, Jacobson, Stephen C, Brown, Pamela J B

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Sexual dimorphism in brain transcriptomes of Amami spiny rats (Tokudaia osimensis): a rodent species where males lack the Y chromosome von Ortega, Madison T, Bivens, Nathan J, Jogahara, Takamichi, Kuroiwa, Asato, Givan, Scott A, Rosenfeld, Cheryl S

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High-throughput sequence analysis reveals structural diversity and improved potency among RNA inhibitors of HIV reverse transcriptase von Ditzler, Mark A, Lange, Margaret J, Bose, Debojit, Bottoms, Christopher A, Virkler, Katherine F, Sawyer, Andrew W, Whatley, Angela S, Spollen, William, Givan, Scott A, Burke, Donald H

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A seed germination transcriptomic study contrasting two soybean genotypes that differ in terms of their tolerance to the deleterious impacts of elevated temperatures during seed fi... von Gillman, Jason D, Biever, Jessica J, Ye, Songqing, Spollen, William G, Givan, Scott A, Lyu, Zhen, Joshi, Trupti, Smith, James R, Fritschi, Felix B

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small genome of an abundant coastal ocean methylotroph von Giovannoni, Stephen J, Hayakawa, Darin H, Tripp, H. James, Stingl, Ulrich, Givan, Scott A, Cho, Jang-Cheon, Oh, Hyun-Myung, Kitner, Joshua B, Vergin, Kevin L, Rappé, Michael S

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Analysis of genome sequences from plant pathogenic Rhodococcus reveals genetic novelties in virulence loci von Creason, Allison L, Vandeputte, Olivier M, Savory, Elizabeth A, Davis, 2nd, Edward W, Putnam, Melodie L, Hu, Erdong, Swader-Hines, David, Mol, Adeline, Baucher, Marie, Prinsen, Els, Zdanowska, Magdalena, Givan, Scott A, El Jaziri, Mondher, Loper, Joyce E, Mahmud, Taifo, Chang, Jeff H

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An improved, high-quality draft genome sequence of the Germination-Arrest Factor-producing Pseudomonas fluorescens WH6 von Kimbrel, Jeffrey A, Givan, Scott A, Halgren, Anne B, Creason, Allison L, Mills, Dallice I, Banowetz, Gary M, Armstrong, Donald J, Chang, Jeff H

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Computational and analytical framework for small RNA profiling by high-throughput sequencing von Fahlgren, Noah, Sullivan, Christopher M, Kasschau, Kristin D, Chapman, Elisabeth J, Cumbie, Jason S, Montgomery, Taiowa A, Gilbert, Sunny D, Dasenko, Mark, Backman, Tyler W H, Givan, Scott A, Carrington, James C

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Transcriptome and DNA methylome analyses reveal underlying mechanisms for the racial disparity in uterine fibroids von Paul, Emmanuel N, Grey, Joshua A, Carpenter, Tyler J, Madaj, Zachary B, Lau, Kin H, Givan, Scott A, Burns, Gregory W, Chandler, Ronald L, Wegienka, Ganesa R, Shen, Hui, Teixeira, Jose M

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