Translational dynamics revealed by genome-wide profiling of ribosome footprints in Arabidopsis von Juntawong, Piyada, Girke, Thomas, Bazin, Jérémie, Bailey-Serres, Julia

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systemPipeR: NGS workflow and report generation environment von H Backman, Tyler W, Girke, Thomas

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WUSCHEL protein movement mediates stem cell homeostasis in the Arabidopsis shoot apex von Yadav, Ram Kishor, Perales, Mariano, Gruel, Jérémy, Girke, Thomas, Jönsson, Henrik, Reddy, G Venugopala

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A maximum common substructure-based algorithm for searching and predicting drug-like compounds von Cao, Yiqun, Jiang, Tao, Girke, Thomas

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ChemmineR: a compound mining framework for R von Cao, Yiqun, Charisi, Anna, Cheng, Li-Chang, Jiang, Tao, Girke, Thomas

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Profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis von Mustroph, Angelika, Zanetti, M. Eugenia, Jang, Charles J.H, Holtan, Hans E, Repetti, Peter P, Galbraith, David W, Girke, Thomas, Bailey-Serres, Julia

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Gene expression map of the Arabidopsis shoot apical meristem stem cell niche von Yadav, Ram Kishor, Girke, Thomas, Pasala, Sumana, Xie, Mingtang, Reddy, G. Venugopala

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Arabidopsis LATERAL ORGAN BOUNDARIES negatively regulates brassinosteroid accumulation to limit growth in organ boundaries von Bell, Elizabeth M., Lin, Wan-ching, Husbands, Aman Y., Yu, Lifeng, Jaganatha, Venkateswari, Jablonska, Barbara, Mangeon, Amanda, Neff, Michael M., Girke, Thomas, Springer, Patricia S.

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Gene regulatory networks shape developmental plasticity of root cell types under water extremes in rice von Reynoso, Mauricio A., Borowsky, Alexander T., Pauluzzi, Germain C., Yeung, Elaine, Zhang, Jianhai, Formentin, Elide, Velasco, Joel, Cabanlit, Sean, Duvenjian, Christine, Prior, Matthew J., Akmakjian, Garo Z., Deal, Roger B., Sinha, Neelima R., Brady, Siobhan M., Girke, Thomas, Bailey-Serres, Julia

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In Planta Expression or Delivery of Potato Aphid Macrosiphum euphorbiae Effectors Me10 and Me23 Enhances Aphid Fecundity von ATAMIAN, Hagop S, CHAUDHARY, Ritu, DAL CIN, Valeriano, BAO, Ergude, GIRKE, Thomas, KALOSHIAN, Isgouhi

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Cloning and Characterization of MicroRNAs from Rice von Sunkar, Ramanjulu, Girke, Thomas, Pradeep Kumar Jain, Zhu, Jian-Kang

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The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence element von Dinh, Thanh Theresa, Girke, Thomas, Liu, Xigang, Yant, Levi, Schmid, Markus, Chen, Xuemei

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Juvenile hormone and its receptor, methoprene-tolerant, control the dynamics of mosquito gene expression von Zou, Zhen, Saha, Tusar T, Roy, Sourav, Shin, Sang Woon, Backman, Tyler W H, Girke, Thomas, White, Kevin P, Raikhel, Alexander S

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Transcriptomes of Eight Arabidopsis thaliana Accessions Reveal Core Conserved, Genotype- and Organ-Specific Responses to Flooding Stress von van Veen, Hans, Vashisht, Divya, Akman, Melis, Girke, Thomas, Mustroph, Angelika, Reinen, Emilie, Hartman, Sjon, Kooiker, Maarten, van Tienderen, Peter, Schranz, M. Eric, Bailey-Serres, Julia, Voesenek, Laurentius A.C.J., Sasidharan, Rashmi

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SEED: efficient clustering of next-generation sequences von BAO, Ergude, TAO JIANG, KALOSHIAN, Isgouhi, GIRKE, Thomas

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Hairy and Groucho mediate the action of juvenile hormone receptor Methoprene-tolerant in gene repression von Saha, Tusar T., Shin, Sang Woon, Dou, Wei, Roy, Sourav, Zhao, Bo, Hou, Yuan, Wang, Xue-Li, Zou, Zhen, Girke, Thomas, Raikhel, Alexander S.

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Small RNA Profiling Reveals Phosphorus Deficiency as a Contributing Factor in Symptom Expression for Citrus Huanglongbing Disease von Zhao, Hongwei, Sun, Ruobai, Albrecht, Ute, Padmanabhan, Chellappan, Wang, Airong, Coffey, Michael D., Girke, Thomas, Wang, Zonghua, Close, Timothy J., Roose, Mikeal, Yokomi, Raymond K., Folimonova, Svetlana, Vidalakis, Georgios, Rouse, Robert, Bowman, Kim D., Jin, Hailing

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fmcsR: mismatch tolerant maximum common substructure searching in R von Wang, Yan, Backman, Tyler W H, Horan, Kevin, Girke, Thomas

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Plant stem cell maintenance involves direct transcriptional repression of differentiation program von Yadav, Ram Kishor, Perales, Mariano, Gruel, Jérémy, Ohno, Carolyn, Heisler, Marcus, Girke, Thomas, Jönsson, Henrik, Reddy, G Venugopala

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Regulation of Gene Expression Patterns in Mosquito Reproduction von Roy, Sourav, Saha, Tusar T, Johnson, Lisa, Zhao, Bo, Ha, Jisu, White, Kevin P, Girke, Thomas, Zou, Zhen, Raikhel, Alexander S

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