Emergence of SARS-CoV-2 through recombination and strong purifying selection von Li, Xiaojun, Giorgi, Elena E., Marichann, Manukumar Honnayakanahalli, Foley, Brian, Xiao, Chuan, Kong, Xiang-Peng, Chen, Yue, Korber, Bette, Gao, Feng, Gnanakaran, S.

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Tracking HIV-1 recombination to resolve its contribution to HIV-1 evolution in natural infection von Song, Hongshuo, Giorgi, Elena E., Ganusov, Vitaly V., Cai, Fangping, Athreya, Gayathri, Yoon, Hyejin, Carja, Oana, Hora, Bhavna, Hraber, Peter, Romero-Severson, Ethan, Jiang, Chunlai, Li, Xiaojun, Wang, Shuyi, Li, Hui, Salazar-Gonzalez, Jesus F., Salazar, Maria G., Goonetilleke, Nilu, Keele, Brandon F., Montefiori, David C., Cohen, Myron S., Shaw, George M., Hahn, Beatrice H., McMichael, Andrew J., Haynes, Barton F., Korber, Bette, Bhattacharya, Tanmoy, Gao, Feng

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Tracking Changes in SARS-CoV-2 Spike: Evidence that D614G Increases Infectivity of the COVID-19 Virus von Korber, Bette, Fischer, Will M., Gnanakaran, Sandrasegaram, Yoon, Hyejin, Theiler, James, Abfalterer, Werner, Hengartner, Nick, Giorgi, Elena E., Bhattacharya, Tanmoy, Foley, Brian, Hastie, Kathryn M., Parker, Matthew D., Partridge, David G., Evans, Cariad M., Freeman, Timothy M., de Silva, Thushan I., Angyal, Adrienne, Brown, Rebecca L., Carrilero, Laura, Green, Luke R., Groves, Danielle C., Johnson, Katie J., Keeley, Alexander J., Lindsey, Benjamin B., Parsons, Paul J., Raza, Mohammad, Rowland-Jones, Sarah, Smith, Nikki, Tucker, Rachel M., Wang, Dennis, Wyles, Matthew D., McDanal, Charlene, Perez, Lautaro G., Tang, Haili, Moon-Walker, Alex, Whelan, Sean P., LaBranche, Celia C., Saphire, Erica O., Montefiori, David C.

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HIV-1 and SARS-CoV-2: Patterns in the evolution of two pandemic pathogens von Fischer, Will, Giorgi, Elena E., Chakraborty, Srirupa, Nguyen, Kien, Bhattacharya, Tanmoy, Theiler, James, Goloboff, Pablo A., Yoon, Hyejin, Abfalterer, Werner, Foley, Brian T., Tegally, Houriiyah, San, James Emmanuel, de Oliveira, Tulio, Wilkinson, Eduan, Msomi, Nokukhanya, Iranzadeh, Arash, Fonseca, Vagner, Doolabh, Deelan, Mlisana, Koleka, von Gottberg, Anne, Walaza, Sibongile, Allam, Mushal, Ismail, Arshad, Mohale, Thabo, Glass, Allison J., Engelbrecht, Susan, Van Zyl, Gert, Preiser, Wolfgang, Petruccione, Francesco, Sigal, Alex, Hardie, Diana, Marais, Gert, Hsiao, Marvin, Korsman, Stephen, Davies, Mary-Ann, Tyers, Lynn, Mudau, Innocent, York, Denis, Maslo, Caroline, Goedhals, Dominique, Abrahams, Shareef, Laguda-Akingba, Oluwakemi, Alisoltani-Dehkordi, Arghavan, Godzik, Adam, Wibmer, Constantinos Kurt, Sewell, Bryan Trevor, Lourenço, José, Pond, Sergei L. Kosakovsky, Weaver, Steven, Giovanetti, Marta, Alcantara, Luiz Carlos Junior, Martin, Darren, Bhiman, Jinal N., Williamson, Carolyn, Gnanakaran, Sandrasegaram, Korber, Bette

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A novel HIV triple broadly neutralizing antibody (bNAb) combination-based passive immunization of infant rhesus macaques achieves durable protective plasma neutralization levels an... von Dankwa, Sedem, Kosman, Christina, Dennis, Maria, Giorgi, Elena E, Vuong, Kenneth, Pahountis, Ioanna, Garza, Ashley, Binuya, Christian, McCarthy, Janice, Mayer, Bryan T, Ngo, Julia T, Enemuo, Chiamaka A, Carnathan, Diane G, Stanfield-Oakley, Sherry, Berendam, Stella J, Weinbaum, Carolyn, Engelman, Kathleen, Magnani, Diogo M, Chan, Cliburn, Ferrari, Guido, Silvestri, Guido, Amara, Rama R, Chahroudi, Ann, Permar, Sallie R, Fouda, Genevieve G, Goswami, Ria

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Phenotypic properties of transmitted founder HIV-1 von Parrish, Nicholas F., Gao, Feng, Li, Hui, Giorgi, Elena E., Barbian, Hannah J., Parrish, Erica H., Zajic, Lara, Iyer, Shilpa S., Decker, Julie M., Kumar, Amit, Hora, Bhavna, Berg, Anna, Cai, Fangping, Hopper, Jennifer, Denny, Thomas N., Ding, Haitao, Ochsenbauer, Christina, Kappes, John C., Galimidi, Rachel P., West, Anthony P., Bjorkman, Pamela J., Wilen, Craig B., Doms, Robert W., O'Brien, Meagan, Bhardwaj, Nina, Borrow, Persephone, Haynes, Barton F., Muldoon, Mark, Theiler, James P., Korber, Bette, Shaw, George M., Hahn, Beatrice H.

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Protective Efficacy of a Global HIV-1 Mosaic Vaccine against Heterologous SHIV Challenges in Rhesus Monkeys von Barouch, Dan H., Stephenson, Kathryn E., Borducchi, Erica N., Smith, Kaitlin, Stanley, Kelly, McNally, Anna G., Liu, Jinyan, Abbink, Peter, Maxfield, Lori F., Seaman, Michael S., Dugast, Anne-Sophie, Alter, Galit, Ferguson, Melissa, Li, Wenjun, Earl, Patricia L., Moss, Bernard, Giorgi, Elena E., Szinger, James J., Eller, Leigh Anne, Billings, Erik A., Rao, Mangala, Tovanabutra, Sodsai, Sanders-Buell, Eric, Weijtens, Mo, Pau, Maria G., Schuitemaker, Hanneke, Robb, Merlin L., Kim, Jerome H., Korber, Bette T., Michael, Nelson L.

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Transmission of single HIV-1 genomes and dynamics of early immune escape revealed by ultra-deep sequencing von Fischer, Will, Ganusov, Vitaly V, Giorgi, Elena E, Hraber, Peter T, Keele, Brandon F, Leitner, Thomas, Han, Cliff S, Gleasner, Cheryl D, Green, Lance, Lo, Chien-Chi, Nag, Ambarish, Wallstrom, Timothy C, Wang, Shuyi, McMichael, Andrew J, Haynes, Barton F, Hahn, Beatrice H, Perelson, Alan S, Borrow, Persephone, Shaw, George M, Bhattacharya, Tanmoy, Korber, Bette T

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Association between mitochondrial genetic variation and breast cancer risk: The Multiethnic Cohort von Li, Yuqing, Giorgi, Elena E, Beckman, Kenneth B, Caberto, Christian, Kazma, Remi, Lum-Jones, Annette, Haiman, Christopher A, Marchand, Loïc Le, Stram, Daniel O, Saxena, Richa, Cheng, Iona

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Genetic identity, biological phenotype, and evolutionary pathways of transmitted/founder viruses in acute and early HIV-1 infection von Salazar-Gonzalez, Jesus F, Salazar, Maria G, Keele, Brandon F, Learn, Gerald H, Giorgi, Elena E, Li, Hui, Decker, Julie M, Wang, Shuyi, Baalwa, Joshua, Kraus, Matthias H, Parrish, Nicholas F, Shaw, Katharina S, Guffey, M Brad, Bar, Katharine J, Davis, Katie L, Ochsenbauer-Jambor, Christina, Kappes, John C, Saag, Michael S, Cohen, Myron S, Mulenga, Joseph, Derdeyn, Cynthia A, Allen, Susan, Hunter, Eric, Markowitz, Martin, Hraber, Peter, Perelson, Alan S, Bhattacharya, Tanmoy, Haynes, Barton F, Korber, Bette T, Hahn, Beatrice H, Shaw, George M

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Estimating time since infection in early homogeneous HIV-1 samples using a poisson model von Giorgi, Elena E, Funkhouser, Bob, Athreya, Gayathri, Perelson, Alan S, Korber, Bette T, Bhattacharya, Tanmoy

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Estimating the Timing of Early Simian-Human Immunodeficiency Virus Infections: a Comparison between Poisson Fitter and BEAST von Giorgi, Elena E., Li, Hui, Bhattacharya, Tanmoy, Shaw, George M., Korber, Bette

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Safety and antiviral activity of triple combination broadly neutralizing monoclonal antibody therapy against HIV-1: a phase 1 clinical trial von Julg, Boris, Stephenson, Kathryn E., Wagh, Kshitij, Tan, Sabrina C., Zash, Rebecca, Walsh, Stephen, Ansel, Jessica, Kanjilal, Diane, Nkolola, Joseph, Walker-Sperling, Victoria E. K., Ophel, Jasper, Yanosick, Katherine, Borducchi, Erica N., Maxfield, Lori, Abbink, Peter, Peter, Lauren, Yates, Nicole L., Wesley, Martina S., Hassell, Tom, Gelderblom, Huub C., deCamp, Allen, Mayer, Bryan T., Sato, Alicia, Gerber, Monica W., Giorgi, Elena E., Gama, Lucio, Koup, Richard A., Mascola, John R., Monczor, Ana, Lupo, Sofia, Rolle, Charlotte-Paige, Arduino, Roberto, DeJesus, Edwin, Tomaras, Georgia D., Seaman, Michael S., Korber, Bette, Barouch, Dan H.

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Mutations that confer resistance to broadly-neutralizing antibodies define HIV-1 variants of transmitting mothers from that of non-transmitting mothers von Kumar, Amit, Giorgi, Elena E., Tu, Joshua J., Martinez, David R., Eudailey, Joshua, Mengual, Michael, Honnayakanahalli Marichannegowda, Manukumar, Van Dyke, Russell, Gao, Feng, Permar, Sallie R.

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Viral Envelope Evolution in Simian-HIV-Infected Neonate and Adult-Dam Pairs of Rhesus Macaques von Giorgi, Elena E, Li, Hui, Hora, Bhavna, Shaw, George M, Wagh, Kshitij, Williams, Wilton B

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Systematic Analysis of Monoclonal Antibodies against Ebola Virus GP Defines Features that Contribute to Protection von Saphire, Erica Ollmann, Schendel, Sharon L., Fusco, Marnie L., Gangavarapu, Karthik, Gunn, Bronwyn M., Wec, Anna Z., Halfmann, Peter J., Brannan, Jennifer M., Herbert, Andrew S., Qiu, Xiangguo, Wagh, Kshitij, He, Shihua, Giorgi, Elena E., Theiler, James, Pommert, Kathleen B.J., Krause, Tyler B., Turner, Hannah L., Murin, Charles D., Pallesen, Jesper, Davidson, Edgar, Ahmed, Rafi, Aman, M. Javad, Bukreyev, Alexander, Burton, Dennis R., Crowe, James E., Davis, Carl W., Georgiou, George, Krammer, Florian, Kyratsous, Christos A., Lai, Jonathan R., Nykiforuk, Cory, Pauly, Michael H., Rijal, Pramila, Takada, Ayato, Townsend, Alain R., Volchkov, Viktor, Walker, Laura M., Wang, Cheng-I., Zeitlin, Larry, Doranz, Benjamin J., Ward, Andrew B., Korber, Bette, Kobinger, Gary P., Andersen, Kristian G., Kawaoka, Yoshihiro, Alter, Galit, Chandran, Kartik, Dye, John M.

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Infant transmitted/founder HIV-1 viruses from peripartum transmission are neutralization resistant to paired maternal plasma von Kumar, Amit, Smith, Claire E P, Giorgi, Elena E, Eudailey, Joshua, Martinez, David R, Yusim, Karina, Douglas, Ayooluwa O, Stamper, Lisa, McGuire, Erin, LaBranche, Celia C, Montefiori, David C, Fouda, Genevieve G, Gao, Feng, Permar, Sallie R

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Neutralization titer biomarker for antibody-mediated prevention of HIV-1 acquisition von Gilbert, Peter B., Huang, Yunda, deCamp, Allan C., Karuna, Shelly, Zhang, Yuanyuan, Magaret, Craig A., Giorgi, Elena E., Korber, Bette, Edlefsen, Paul T., Rossenkhan, Raabya, Juraska, Michal, Rudnicki, Erika, Kochar, Nidhi, Huang, Ying, Carpp, Lindsay N., Barouch, Dan H., Mkhize, Nonhlanhla N., Hermanus, Tandile, Kgagudi, Prudence, Bekker, Valerie, Kaldine, Haajira, Mapengo, Rutendo E., Eaton, Amanda, Domin, Elize, West, Carley, Feng, Wenhong, Tang, Haili, Seaton, Kelly E., Heptinstall, Jack, Brackett, Caroline, Chiong, Kelvin, Tomaras, Georgia D., Andrew, Philip, Mayer, Bryan T., Reeves, Daniel B., Sobieszczyk, Magdalena E., Garrett, Nigel, Sanchez, Jorge, Gay, Cynthia, Makhema, Joseph, Williamson, Carolyn, Mullins, James I., Hural, John, Cohen, Myron S., Corey, Lawrence, Montefiori, David C., Morris, Lynn

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Maternal Broadly Neutralizing Antibodies Can Select for Neutralization-Resistant, Infant-Transmitted/Founder HIV Variants von Martinez, David R., Tu, Joshua J., Kumar, Amit, Mangold, Jesse F., Mangan, Riley J., Goswami, Ria, Giorgi, Elena E., Chen, Juilin, Mengual, Michael, Douglas, Ayooluwa O., Heimsath, Holly, Saunders, Kevin O., Nicely, Nathan, Eudailey, Joshua, Hernandez, Giovanna, Morgan-Asiedu, Papa Kwadwo, Wiehe, Kevin, Haynes, Barton F., Moody, M. Anthony, LaBranche, Celia, Montefiori, David C., Gao, Feng, Permar, Sallie R.

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Neutralization profiles of HIV-1 viruses from the VRC01 Antibody Mediated Prevention (AMP) trials von Mkhize, Nonhlanhla N, Yssel, Anna E J, Kaldine, Haajira, van Dorsten, Rebecca T, Woodward Davis, Amanda S, Beaume, Nicolas, Matten, David, Lambson, Bronwen, Modise, Tandile, Kgagudi, Prudence, York, Talita, Westfall, Dylan H, Giorgi, Elena E, Korber, Bette, Anthony, Colin, Mapengo, Rutendo E, Bekker, Valerie, Domin, Elizabeth, Eaton, Amanda, Deng, Wenjie, DeCamp, Allan, Huang, Yunda, Gilbert, Peter B, Gwashu-Nyangiwe, Asanda, Thebus, Ruwayhida, Ndabambi, Nonkululeko, Mielke, Dieter, Mgodi, Nyaradzo, Karuna, Shelly, Edupuganti, Srilatha, Seaman, Michael S, Corey, Lawrence, Cohen, Myron S, Hural, John, McElrath, M Juliana, Mullins, James I, Montefiori, David, Moore, Penny L, Williamson, Carolyn, Morris, Lynn

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