Improving ancient DNA read mapping against modern reference genomes von Schubert, Mikkel, Ginolhac, Aurelien, Lindgreen, Stinus, Thompson, John F, Al-Rasheid, Khaled A S, Willerslev, Eske, Krogh, Anders, Orlando, Ludovic

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mapDamage: testing for damage patterns in ancient DNA sequences von Ginolhac, Aurelien, Rasmussen, Morten, Gilbert, M. Thomas P., Willerslev, Eske, Orlando, Ludovic

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Focal adhesion kinase plays a dual role in TRAIL resistance and metastatic outgrowth of malignant melanoma von Del Mistro, Greta, Riemann, Shamala, Schindler, Sebastian, Beissert, Stefan, Kontermann, Roland E., Ginolhac, Aurelien, Halder, Rashi, Presta, Luana, Sinkkonen, Lasse, Sauter, Thomas, Kulms, Dagmar

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mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters von Jónsson, Hákon, Ginolhac, Aurélien, Schubert, Mikkel, Johnson, Philip L F, Orlando, Ludovic

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Mitochondrial phylogenomics of modern and ancient equids von Vilstrup, Julia T, Seguin-Orlando, Andaine, Stiller, Mathias, Ginolhac, Aurelien, Raghavan, Maanasa, Nielsen, Sandra C A, Weinstock, Jacobo, Froese, Duane, Vasiliev, Sergei K, Ovodov, Nikolai D, Clary, Joel, Helgen, Kristofer M, Fleischer, Robert C, Cooper, Alan, Shapiro, Beth, Orlando, Ludovic

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True single-molecule DNA sequencing of a pleistocene horse bone von Orlando, Ludovic, Ginolhac, Aurelien, Raghavan, Maanasa, Vilstrup, Julia, Rasmussen, Morten, Magnussen, Kim, Steinmann, Kathleen E, Kapranov, Philipp, Thompson, John F, Zazula, Grant, Froese, Duane, Moltke, Ida, Shapiro, Beth, Hofreiter, Michael, Al-Rasheid, Khaled A S, Gilbert, M Thomas P, Willerslev, Eske

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Characterization of ancient and modern genomes by SNP detection and phylogenomic and metagenomic analysis using PALEOMIX von Schubert, Mikkel, Ermini, Luca, Sarkissian, Clio Der, Jónsson, Hákon, Ginolhac, Aurélien, Schaefer, Robert, Martin, Michael D, Fernández, Ruth, Kircher, Martin, McCue, Molly, Willerslev, Eske, Orlando, Ludovic

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Identification of genes under dynamic post-transcriptional regulation from time-series epigenomic data von Becker, Julia C, Gérard, Deborah, Ginolhac, Aurélien, Sauter, Thomas, Sinkkonen, Lasse

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TREM2 triggers microglial density and age‐related neuronal loss von Linnartz‐Gerlach, Bettina, Bodea, Liviu‐Gabriel, Klaus, Christine, Ginolhac, Aurélien, Halder, Rashi, Sinkkonen, Lasse, Walter, Jochen, Colonna, Marco, Neumann, Harald

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Prehistoric genomes reveal the genetic foundation and cost of horse domestication von Schubert, Mikkel, Jónsson, Hákon, Chang, Dan, Sarkissian, Clio Der, Ermini, Luca, Ginolhac, Aurélien, Albrechtsen, Anders, Dupanloup, Isabelle, Foucal, Adrien, Petersen, Bent, Fumagalli, Matteo, Raghavan, Maanasa, Seguin-Orlando, Andaine, Korneliussen, Thorfinn S, Velazquez, Amhed MV, Stenderup, Jesper, Hoover, Cindi A, Rubin, Carl-Johan, Alfarhan, Ahmed H, Alquraishi, Saleh A, Al-Rasheid, Khaled AS, MacHugh, David E, Kalbfleisch, Ted, MacLeod, James N, Rubin, Edward M, Sicheritz-Ponten, Thomas, Andersson, Leif, Hofreiter, Michael, Marques-Bonet, Tomas, Gilbert, M Thomas P, Nielsen, Rasmus, Excoffier, Laurent, Willerslev, Eske, Shapiro, Beth, Orlando, Ludovic

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Proteomic Analysis of a Pleistocene Mammoth Femur Reveals More than One Hundred Ancient Bone Proteins von Cappellini, Enrico, Jensen, Lars J, Szklarczyk, Damian, Ginolhac, Aurélien, da Fonseca, Rute A. R, Stafford, Thomas W, Holen, Steven R, Collins, Matthew J, Orlando, Ludovic, Willerslev, Eske, Gilbert, M. Thomas P, Olsen, Jesper V

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Speciation with gene flow in equids despite extensive chromosomal plasticity von Jónsson, Hákon, Schubert, Mikkel, Seguin-Orlando, Andaine, Ginolhac, Aurélien, Petersen, Lillian, Fumagalli, Matteo, Albrechtsen, Anders, Petersen, Bent, Korneliussen, Thorfinn S., Vilstrup, Julia T., Lear, Teri, Myka, Jennifer Leigh, Lundquist, Judith, Miller, Donald C., Alfarhan, Ahmed H., Alquraishi, Saleh A., Al-Rasheid, Khaled A. S., Stagegaard, Julia, Strauss, Günter, Bertelsen, Mads Frost, Sicheritz-Ponten, Thomas, Antczak, Douglas F., Bailey, Ernest, Nielsen, Rasmus, Willerslev, Eske, Orlando, Ludovic

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A comparative study of ancient environmental DNA to pollen and macrofossils from lake sediments reveals taxonomic overlap and additional plant taxa von Pedersen, Mikkel Winther, Ginolhac, Aurélien, Orlando, Ludovic, Olsen, Jesper, Andersen, Kenneth, Holm, Jakob, Funder, Svend, Willerslev, Eske, Kjær, Kurt H.

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Improving the performance of true single molecule sequencing for ancient DNA von Ginolhac, Aurelien, Vilstrup, Julia, Stenderup, Jesper, Rasmussen, Morten, Stiller, Mathias, Shapiro, Beth, Zazula, Grant, Froese, Duane, Steinmann, Kathleen E, Thompson, John F, Al-Rasheid, Khaled A S, Gilbert, Thomas M P, Willerslev, Eske, Orlando, Ludovic

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Loss of Myosin Vb in colorectal cancer is a strong prognostic factor for disease recurrence von Letellier, Elisabeth, Schmitz, Martine, Ginolhac, Aurélien, Rodriguez, Fabien, Ullmann, Pit, Qureshi-Baig, Komal, Frasquilho, Sonia, Antunes, Laurent, Haan, Serge

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Temporal enhancer profiling of parallel lineages identifies AHR and GLIS1 as regulators of mesenchymal multipotency von Gérard, Deborah, Schmidt, Florian, Ginolhac, Aurélien, Schmitz, Martine, Halder, Rashi, Ebert, Peter, Schulz, Marcel H, Sauter, Thomas, Sinkkonen, Lasse

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PARK7/DJ-1 deficiency impairs microglial activation in response to LPS-induced inflammation von Lind-Holm Mogensen, Frida, Sousa, Carole, Ameli, Corrado, Badanjak, Katja, Pereira, Sandro L, Muller, Arnaud, Kaoma, Tony, Coowar, Djalil, Scafidi, Andrea, Poovathingal, Suresh K, Tziortziou, Maria, Antony, Paul M A, Nicot, Nathalie, Ginolhac, Aurélien, Vogt Weisenhorn, Daniela M, Wurst, Wolfgang, Poli, Aurélie, Nazarov, Petr V, Skupin, Alexander, Grünewald, Anne, Michelucci, Alessandro

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Reduced sialylation triggers homeostatic synapse and neuronal loss in middle-aged mice von Klaus, Christine, Hansen, Jan N., Ginolhac, Aurélien, Gérard, Deborah, Gnanapragassam, Vinayaga S., Horstkorte, Rüdiger, Rossdam, Charlotte, Buettner, Falk F.R., Sauter, Thomas, Sinkkonen, Lasse, Neumann, Harald, Linnartz-Gerlach, Bettina

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Multiomics analysis identifies novel facilitators of human dopaminergic neuron differentiation von Gomez Ramos, Borja, Ohnmacht, Jochen, de Lange, Nikola, Valceschini, Elena, Ginolhac, Aurélien, Catillon, Marie, Ferrante, Daniele, Rakovic, Aleksandar, Halder, Rashi, Massart, François, Arena, Giuseppe, Antony, Paul, Bolognin, Silvia, Klein, Christine, Krause, Roland, Schulz, Marcel H, Sauter, Thomas, Krüger, Rejko, Sinkkonen, Lasse

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Evolutionary Genomics and Conservation of the Endangered Przewalski’s Horse von Der Sarkissian, Clio, Ermini, Luca, Schubert, Mikkel, Yang, Melinda A., Librado, Pablo, Fumagalli, Matteo, Jónsson, Hákon, Bar-Gal, Gila Kahila, Albrechtsen, Anders, Vieira, Filipe G., Petersen, Bent, Ginolhac, Aurélien, Seguin-Orlando, Andaine, Magnussen, Kim, Fages, Antoine, Gamba, Cristina, Lorente-Galdos, Belen, Polani, Sagi, Steiner, Cynthia, Neuditschko, Markus, Jagannathan, Vidhya, Feh, Claudia, Greenblatt, Charles L., Ludwig, Arne, Abramson, Natalia I., Zimmermann, Waltraut, Schafberg, Renate, Tikhonov, Alexei, Sicheritz-Ponten, Thomas, Willerslev, Eske, Marques-Bonet, Tomas, Ryder, Oliver A., McCue, Molly, Rieder, Stefan, Leeb, Tosso, Slatkin, Montgomery, Orlando, Ludovic

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