Combining machine learning systems and multiple docking simulation packages to improve docking prediction reliability for network pharmacology von Hsin, Kun-Yi, Ghosh, Samik, Kitano, Hiroaki

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Lenvatinib plus anti-PD-1 antibody combination treatment activates CD8+ T cells through reduction of tumor-associated macrophage and activation of the interferon pathway von Kato, Yu, Tabata, Kimiyo, Kimura, Takayuki, Yachie-Kinoshita, Ayako, Ozawa, Yoichi, Yamada, Kazuhiko, Ito, Junichi, Tachino, Sho, Hori, Yusaku, Matsuki, Masahiro, Matsuoka, Yukiko, Ghosh, Samik, Kitano, Hiroaki, Nomoto, Kenichi, Matsui, Junji, Funahashi, Yasuhiro

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Noninvasive, label-free image approaches to predict multimodal molecular markers in pluripotency assessment von Akiyoshi, Ryutaro, Hase, Takeshi, Sathiyananthavel, Mayuri, Ghosh, Samik, Kitano, Hiroaki, Yachie, Ayako

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Integrating Pathways of Parkinson's Disease in a Molecular Interaction Map von Fujita, Kazuhiro A., Ostaszewski, Marek, Matsuoka, Yukiko, Ghosh, Samik, Glaab, Enrico, Trefois, Christophe, Crespo, Isaac, Perumal, Thanneer M., Jurkowski, Wiktor, Antony, Paul M. A., Diederich, Nico, Buttini, Manuel, Kodama, Akihiko, Satagopam, Venkata P., Eifes, Serge, del Sol, Antonio, Schneider, Reinhard, Kitano, Hiroaki, Balling, Rudi

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A comprehensive map of the mTOR signaling network von Roux, Philippe P, Kitano, Hiroaki, Caron, Etienne, Ghosh, Samik, Matsuoka, Yukiko, Ashton-Beaucage, Dariel, Therrien, Marc, Lemieux, Sébastien, Perreault, Claude

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Harnessing diversity towards the reconstructing of large scale gene regulatory networks von Hase, Takeshi, Ghosh, Samik, Yamanaka, Ryota, Kitano, Hiroaki

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Artificial intelligence-based computational framework for drug-target prioritization and inference of novel repositionable drugs for Alzheimer's disease von Tsuji, Shingo, Hase, Takeshi, Yachie-Kinoshita, Ayako, Nishino, Taiko, Ghosh, Samik, Kikuchi, Masataka, Shimokawa, Kazuro, Aburatani, Hiroyuki, Kitano, Hiroaki, Tanaka, Hiroshi

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AlzPathway: a comprehensive map of signaling pathways of Alzheimer's disease von Mizuno, Satoshi, Iijima, Risa, Ogishima, Soichi, Kikuchi, Masataka, Matsuoka, Yukiko, Ghosh, Samik, Miyamoto, Tadashi, Miyashita, Akinori, Kuwano, Ryozo, Tanaka, Hiroshi

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Payao: a community platform for SBML pathway model curation von Matsuoka, Yukiko, Ghosh, Samik, Kikuchi, Norihiro, Kitano, Hiroaki

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Precise Temporal Profiling of Signaling Complexes in Primary Cells Using SWATH Mass Spectrometry von Caron, Etienne, Roncagalli, Romain, Hase, Takeshi, Wolski, Witold E., Choi, Meena, Menoita, Marisa G., Durand, Stephane, García-Blesa, Antonio, Fierro-Monti, Ivo, Sajic, Tatjana, Heusel, Moritz, Weiss, Tobias, Malissen, Marie, Schlapbach, Ralph, Collins, Ben C., Ghosh, Samik, Kitano, Hiroaki, Aebersold, Ruedi, Malissen, Bernard, Gstaiger, Matthias

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Enabling Personalization for Digital Cognitive Stimulation to Support Communication With People With Dementia: Pilot Intervention Study as a Prelude to AI Development von Hird, Nick, Osaki, Tohmi, Ghosh, Samik, Palaniappan, Sucheendra K, Maeda, Kiyoshi

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Sequence homology in eukaryotes (SHOE): interactive visual tool for promoter analysis von Polouliakh, Natalia, Horton, Paul, Shibanai, Kazuhiro, Takata, Kodai, Ludwig, Vanessa, Ghosh, Samik, Kitano, Hiroaki

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A Geometric Clustering Tool (AGCT) to robustly unravel the inner cluster structures of time-series gene expressions von Nock, Richard, Polouliakh, Natalia, Nielsen, Frank, Oka, Keigo, Connell, Carlin R., Heimhofer, Cedric, Shibanai, Kazuhiro, Ghosh, Samik, Aisaki, Ken-ichi, Kitajima, Satoshi, Kanno, Jun, Akama, Taketo, Kitano, Hiroaki

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CTen: a web-based platform for identifying enriched cell types from heterogeneous microarray data von Shoemaker, Jason E, Lopes, Tiago J S, Ghosh, Samik, Matsuoka, Yukiko, Kawaoka, Yoshihiro, Kitano, Hiroaki

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A comprehensive map of the influenza A virus replication cycle von Matsuoka, Yukiko, Matsumae, Hiromi, Katoh, Manami, Eisfeld, Amie J, Neumann, Gabriele, Hase, Takeshi, Ghosh, Samik, Shoemaker, Jason E, Lopes, Tiago J S, Watanabe, Tokiko, Watanabe, Shinji, Fukuyama, Satoshi, Kitano, Hiroaki, Kawaoka, Yoshihiro

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Large scale text mining for deriving useful insights: A case study focused on microbiome von Ahmed, Syed Ashif Jardary Al, Bapatdhar, Nishad, Kumar, Bipin Pradeep, Ghosh, Samik, Yachie, Ayako, Palaniappan, Sucheendra K.

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Evaluating the impact of a countrywide, market-based roll-out of multiple micronutrient supplementation on low birth weight in Bangladesh: protocol for a two-arm, quasi-experimenta... von Hossain, Muttaquina, Sanin, Kazi Istiaque, Haque, Md Ahshanul, Mbuya, Mduduzi N N, Ghosh, Samik, Aksari, Sufia, Gibson, Sarah, Neufeld, Lynnette, Bipul, Moniruzzaman, Matubbar, Shahajahan, Rahman, Md Moshiur, Khondker, Rudaba, Salasibew, Mihretab, Ahmed, Tahmeed

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A comprehensive molecular interaction map of the budding yeast cell cycle von Kitano, Hiroaki, Kaizu, Kazunari, Ghosh, Samik, Matsuoka, Yukiko, Moriya, Hisao, Shimizu-Yoshida, Yuki

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AI-driven laboratory workflows enable operation in the age of social distancing von Marescotti, Diego, Narayanamoorthy, Chandrasekaran, Bonjour, Filipe, Kuwae, Ken, Graber, Luc, Calvino-Martin, Florian, Ghosh, Samik, Hoeng, Julia

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A subnational reproductive, maternal, newborn, child, and adolescent health and development atlas of India von Pezzulo, Carla, Tejedor-Garavito, Natalia, Chan, Ho Man Theophilus, Dreoni, Ilda, Kerr, David, Ghosh, Samik, Bonnie, Amy, Bondarenko, Maksym, Salasibew, Mihretab, Tatem, Andrew J.

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