Sequential actions of EOMES and T-BET promote stepwise maturation of natural killer cells von Zhang, Jiang, Le Gras, Stéphanie, Pouxvielh, Kevin, Faure, Fabrice, Fallone, Lucie, Kern, Nicolas, Moreews, Marion, Mathieu, Anne-Laure, Schneider, Raphaël, Marliac, Quentin, Jung, Mathieu, Berton, Aurore, Hayek, Simon, Vidalain, Pierre-Olivier, Marçais, Antoine, Dodard, Garvin, Dejean, Anne, Brossay, Laurent, Ghavi-Helm, Yad, Walzer, Thierry

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Highly rearranged chromosomes reveal uncoupling between genome topology and gene expression von Ghavi-Helm, Yad, Jankowski, Aleksander, Meiers, Sascha, Viales, Rebecca R., Korbel, Jan O., Furlong, Eileen E. M.

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Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development von Bonn, Stefan, Zinzen, Robert P, Girardot, Charles, Gustafson, E Hilary, Perez-Gonzalez, Alexis, Delhomme, Nicolas, Ghavi-Helm, Yad, Wilczyński, Bartek, Riddell, Andrew, Furlong, Eileen E M

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Dual functionality of cis -regulatory elements as developmental enhancers and Polycomb response elements von Erceg, Jelena, Pakozdi, Tibor, Marco-Ferreres, Raquel, Ghavi-Helm, Yad, Girardot, Charles, Bracken, Adrian P, Furlong, Eileen E M

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FourCSeq: analysis of 4C sequencing data von Klein, Felix A, Pakozdi, Tibor, Anders, Simon, Ghavi-Helm, Yad, Furlong, Eileen E M, Huber, Wolfgang

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Chromosome topology guides the Drosophila Dosage Compensation Complex for target gene activation von Schauer, Tamás, Ghavi‐Helm, Yad, Sexton, Tom, Albig, Christian, Regnard, Catherine, Cavalli, Giacomo, Furlong, Eileen EM, Becker, Peter B

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Zeb1 represses TCR signaling, promotes the proliferation of T cell progenitors and is essential for NK1.1+ T cell development von Zhang, Jiang, Wencker, Mélanie, Marliac, Quentin, Berton, Aurore, Hasan, Uzma, Schneider, Raphaël, Laubreton, Daphné, Cherrier, Dylan E., Mathieu, Anne-Laure, Rey, Amaury, Jiang, Wenzheng, Caramel, Julie, Genestier, Laurent, Marçais, Antoine, Marvel, Jacqueline, Ghavi-Helm, Yad, Walzer, Thierry

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PHD and TFIIS-Like domains of the Bye1 transcription factor determine its multivalent genomic distribution von Pinskaya, Marina, Ghavi-Helm, Yad, Mariotte-Labarre, Sylvie, Morillon, Antonin, Soutourina, Julie, Werner, Michel

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Mutations of RNA polymerase II activate key genes of the nucleoside triphosphate biosynthetic pathways von Kwapisz, Marta, Wery, Maxime, Després, Daphné, Ghavi-Helm, Yad, Soutourina, Julie, Thuriaux, Pierre, Lacroute, François

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Functional Consequences of Chromosomal Rearrangements on Gene Expression: Not So Deleterious After All? von Ghavi-Helm, Yad

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Multigenome analysis identifies a worldwide distributed epidemic Legionella pneumophila clone that emerged within a highly diverse species von Cazalet, Christel, Jarraud, Sophie, Ghavi-Helm, Yad, Kunst, Frank, Glaser, Philippe, Etienne, Jerome, Buchrieser, Carmen

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Enhancer loops appear stable during development and are associated with paused polymerase von Ghavi-Helm, Yad, Klein, Felix A., Pakozdi, Tibor, Ciglar, Lucia, Noordermeer, Daan, Huber, Wolfgang, Furlong, Eileen E. M.

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3D genome organisation in Drosophila von Moretti, Charlotte, Stévant, Isabelle, Ghavi-Helm, Yad

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Enhancer–promoter interactions can form independently of genomic distance and be functional across TAD boundaries von Balasubramanian, Deevitha, Borges Pinto, Pedro, Grasso, Alexia, Vincent, Séverine, Tarayre, Hélène, Lajoignie, Damien, Ghavi-Helm, Yad

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m6A RNA methylation regulates promoter- proximal pausing of RNA polymerase II von Akhtar, Junaid, Renaud, Yoan, Albrecht, Steffen, Ghavi-Helm, Yad, Roignant, Jean-Yves, Silies, Marion, Junion, Guillaume

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Chromatin gene-gene loops support the cross-regulation of genes with related function von Pollex, Tim, Marco-Ferreres, Raquel, Ciglar, Lucia, Ghavi-Helm, Yad, Rabinowitz, Adam, Viales, Rebecca Rodriguez, Schaub, Christoph, Jankowski, Aleksander, Girardot, Charles, Furlong, Eileen E.M.

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Genome-wide location analysis reveals a role of TFIIS in RNA polymerase III transcription von Ghavi-Helm, Yad, Michaut, Magali, Acker, Joël, Aude, Jean-Christophe, Thuriaux, Pierre, Werner, Michel, Soutourina, Julie

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Dual topologies of myotomal collagen XV and Tenascin C act in concert to guide and shape developing motor axons von Nemoz-Billet, Laurie, Balland, Martial, Gilquin, Laurent, Gillet, Benjamin, Stévant, Isabelle, Guillon, Emilie, Hughes, Sandrine, Carpentier, Gilles, Vaganay, Elisabeth, Sohm, Frédéric, Misiak, Vladimir, Gonzalez-Melo, Mary-Julieth, Koch, Manuel, Ghavi-Helm, Yad, Bretaud, Sandrine, Ruggiero, Florence

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Dual topologies of myotomal collagen XV and Tenascin C act in concert to guide and shape developing motor axons von Nemoz-Billet, Laurie, Balland, Martial, Gilquin, Laurent, Gillet, Benjamin, Stévant, Isabelle, Guillon, Emilie, Hughes, Sandrine, Carpentier, Gilles, Vaganay, Elisabeth, Sohm, Frédéric, Misiak, Vladimir, Gonzalez-Melo, Mary-Julieth, Koch, Manuel, Ghavi-Helm, Yad, Bretaud, Sandrine, Ruggiero, Florence

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Mediator-Dependent Recruitment of TFIIH Modules in Preinitiation Complex von Esnault, Cyril, Ghavi-Helm, Yad, Brun, Sylvain, Soutourina, Julie, Van Berkum, Nynke, Boschiero, Claire, Holstege, Frank, Werner, Michel

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