Advances in understanding cancer genomes through second-generation sequencing von Meyerson, Matthew, Gabriel, Stacey, Getz, Gad

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RNA sequence analysis reveals macroscopic somatic clonal expansion across normal tissues von Yizhak, Keren, Aguet, François, Kim, Jaegil, Hess, Julian M, Kübler, Kirsten, Grimsby, Jonna, Frazer, Ruslana, Zhang, Hailei, Haradhvala, Nicholas J, Rosebrock, Daniel, Livitz, Dimitri, Li, Xiao, Arich-Landkof, Eila, Shoresh, Noam, Stewart, Chip, Segrè, Ayellet V, Branton, Philip A, Polak, Paz, Ardlie, Kristin G, Getz, Gad

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Genomic complexity of multiple myeloma and its clinical implications von Manier, Salomon, Salem, Karma Z., Park, Jihye, Landau, Dan A., Getz, Gad, Ghobrial, Irene M.

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Single-cell RNA sequencing: one step closer to the clinic von Sklavenitis-Pistofidis, Romanos, Getz, Gad, Ghobrial, Irene

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RNA-SeQC 2: efficient RNA-seq quality control and quantification for large cohorts von Graubert, Aaron, Aguet, Francois, Ravi, Arvind, Ardlie, Kristin G., Getz, Gad

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Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples von Cibulskis, Kristian, Lawrence, Michael S, Carter, Scott L, Sivachenko, Andrey, Jaffe, David, Sougnez, Carrie, Gabriel, Stacey, Meyerson, Matthew, Lander, Eric S, Getz, Gad

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Response and Acquired Resistance to Everolimus in Anaplastic Thyroid Cancer von Wagle, Nikhil, Grabiner, Brian C, Van Allen, Eliezer M, Amin-Mansour, Ali, Taylor-Weiner, Amaro, Rosenberg, Mara, Gray, Nathanael, Barletta, Justine A, Guo, Yanan, Swanson, Scott J, Ruan, Daniel T, Hanna, Glenn J, Haddad, Robert I, Getz, Gad, Kwiatkowski, David J, Carter, Scott L, Sabatini, David M, Jänne, Pasi A, Garraway, Levi A, Lorch, Jochen H

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Single-cell profiling of tumour evolution in multiple myeloma — opportunities for precision medicine von Dutta, Ankit K., Alberge, Jean-Baptiste, Sklavenitis-Pistofidis, Romanos, Lightbody, Elizabeth D., Getz, Gad, Ghobrial, Irene M.

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Type 2 diabetes genetic loci informed by multi-trait associations point to disease mechanisms and subtypes: A soft clustering analysis von Udler, Miriam S, Kim, Jaegil, von Grotthuss, Marcin, Bonàs-Guarch, Sílvia, Cole, Joanne B, Chiou, Joshua, Boehnke, Michael, Laakso, Markku, Atzmon, Gil, Glaser, Benjamin, Mercader, Josep M, Gaulton, Kyle, Flannick, Jason, Getz, Gad, Florez, Jose C

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Predicting and affecting response to cancer therapy based on pathway-level biomarkers von Ben-Hamo, Rotem, Jacob Berger, Adi, Gavert, Nancy, Miller, Mendy, Pines, Guy, Oren, Roni, Pikarsky, Eli, Benes, Cyril H., Neuman, Tzahi, Zwang, Yaara, Efroni, Sol, Getz, Gad, Straussman, Ravid

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Unannotated proteins expand the MHC-I-restricted immunopeptidome in cancer von Ouspenskaia, Tamara, Law, Travis, Clauser, Karl R., Klaeger, Susan, Sarkizova, Siranush, Aguet, François, Li, Bo, Christian, Elena, Knisbacher, Binyamin A., Le, Phuong M., Hartigan, Christina R., Keshishian, Hasmik, Apffel, Annie, Oliveira, Giacomo, Zhang, Wandi, Chen, Sarah, Chow, Yuen Ting, Ji, Zhe, Jungreis, Irwin, Shukla, Sachet A., Justesen, Sune, Bachireddy, Pavan, Kellis, Manolis, Getz, Gad, Hacohen, Nir, Keskin, Derin B., Carr, Steven A., Wu, Catherine J., Regev, Aviv

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GISTIC2.0 facilitates sensitive and confident localization of the targets of focal somatic copy-number alteration in human cancers von Mermel, Craig H, Schumacher, Steven E, Hill, Barbara, Meyerson, Matthew L, Beroukhim, Rameen, Getz, Gad

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Control of tumor-associated macrophages and T cells in glioblastoma via AHR and CD39 von Takenaka, Maisa C., Gabriely, Galina, Rothhammer, Veit, Mascanfroni, Ivan D., Wheeler, Michael A., Chao, Chun-Cheih, Gutiérrez-Vázquez, Cristina, Kenison, Jessica, Tjon, Emily C., Barroso, Andreia, Vandeventer, Tyler, de Lima, Kalil Alves, Rothweiler, Sonja, Mayo, Lior, Ghannam, Soufiene, Zandee, Stephanie, Healy, Luke, Sherr, David, Farez, Mauricio F., Prat, Alexandre, Antel, Jack, Reardon, David A., Zhang, Hailei, Robson, Simon C., Getz, Gad, Weiner, Howard L., Quintana, Francisco J.

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Making sense of cancer genomic data von Chin, Lynda, Hahn, William C, Getz, Gad, Meyerson, Matthew

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Single-nucleus cross-tissue molecular reference maps toward understanding disease gene function von Eraslan, Gökcen, Drokhlyansky, Eugene, Anand, Shankara, Fiskin, Evgenij, Subramanian, Ayshwarya, Slyper, Michal, Wang, Jiali, Van Wittenberghe, Nicholas, Rouhana, John M, Waldman, Julia, Ashenberg, Orr, Lek, Monkol, Dionne, Danielle, Win, Thet Su, Cuoco, Michael S, Kuksenko, Olena, Tsankov, Alexander M, Branton, Philip A, Marshall, Jamie L, Greka, Anna, Getz, Gad, Segrè, Ayellet V, Aguet, François, Rozenblatt-Rosen, Orit, Ardlie, Kristin G, Regev, Aviv

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Age-Related Clonal Hematopoiesis Associated with Adverse Outcomes von Jaiswal, Siddhartha, Fontanillas, Pierre, Flannick, Jason, Manning, Alisa, Grauman, Peter V, Mar, Brenton G, Lindsley, R. Coleman, Mermel, Craig H, Burtt, Noel, Chavez, Alejandro, Higgins, John M, Moltchanov, Vladislav, Kuo, Frank C, Kluk, Michael J, Henderson, Brian, Kinnunen, Leena, Koistinen, Heikki A, Ladenvall, Claes, Getz, Gad, Correa, Adolfo, Banahan, Benjamin F, Gabriel, Stacey, Kathiresan, Sekar, Stringham, Heather M, McCarthy, Mark I, Boehnke, Michael, Tuomilehto, Jaakko, Haiman, Christopher, Groop, Leif, Atzmon, Gil, Wilson, James G, Neuberg, Donna, Altshuler, David, Ebert, Benjamin L

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Comprehensive analysis of cancer-associated somatic mutations in class I HLA genes von Shukla, Sachet A, Rooney, Michael S, Rajasagi, Mohini, Tiao, Grace, Dixon, Philip M, Lawrence, Michael S, Stevens, Jonathan, Lane, William J, Dellagatta, Jamie L, Steelman, Scott, Sougnez, Carrie, Cibulskis, Kristian, Kiezun, Adam, Hacohen, Nir, Brusic, Vladimir, Wu, Catherine J, Getz, Gad

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SvABA: genome-wide detection of structural variants and indels by local assembly von Wala, Jeremiah A, Bandopadhayay, Pratiti, Greenwald, Noah F, O'Rourke, Ryan, Sharpe, Ted, Stewart, Chip, Schumacher, Steve, Li, Yilong, Weischenfeldt, Joachim, Yao, Xiaotong, Nusbaum, Chad, Campbell, Peter, Getz, Gad, Meyerson, Matthew, Zhang, Cheng-Zhong, Imielinski, Marcin, Beroukhim, Rameen

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Scaling computational genomics to millions of individuals with GPUs von Taylor-Weiner, Amaro, Aguet, François, Haradhvala, Nicholas J, Gosai, Sager, Anand, Shankara, Kim, Jaegil, Ardlie, Kristin, Van Allen, Eliezer M, Getz, Gad

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RNA-SeQC: RNA-seq metrics for quality control and process optimization von DELUCA, David S, LEVIN, Joshua Z, SIVACHENKO, Andrey, FENNELL, Timothy, NAZAIRE, Marc-Danie, WILLIAMS, Chris, REICH, Michael, WINCKLER, Wendy, GETZ, Gad

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