The utility of Escherichia coli as a contamination indicator for rural drinking water: Evidence from whole genome sequencing von Nowicki, Saskia, deLaurent, Zaydah R., de Villiers, Etienne P., Githinji, George, Charles, Katrina J.

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Tracking the introduction and spread of SARS-CoV-2 in coastal Kenya von Githinji, George, de Laurent, Zaydah R., Mohammed, Khadija Said, Omuoyo, Donwilliams O., Macharia, Peter M., Morobe, John M., Otieno, Edward, Kinyanjui, Samson M., Agweyu, Ambrose, Maitha, Eric, Kitole, Ben, Suleiman, Thani, Mwakinangu, Mohamed, Nyambu, John, Otieno, John, Salim, Barke, Kasera, Kadondi, Kiiru, John, Aman, Rashid, Barasa, Edwine, Warimwe, George, Bejon, Philip, Tsofa, Benjamin, Ochola-Oyier, Lynette Isabella, Nokes, D. James, Agoti, Charles N.

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New SARS-CoV-2 Omicron Variant with Spike Protein Mutation Y451H, Kilifi, Kenya, March–May 2023 von Mwanga, Mike J, Lambisia, Arnold W, Morobe, John Mwita, Murunga, Nickson, Moraa, Edidah, Ndwiga, Leonard, Cheruiyot, Robinson, Musyoki, Jennifer, Mutunga, Martin, GuzmanRincon, Laura M, Sande, Charles, Mwangangi, Joseph, Bejon, Philip, Ochola-Oyier, Lynette Isabella, Nokes, D. James, Agoti, Charles N, Nyiro, Joyce, Githinji, George

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Optimization of the SARS-CoV-2 ARTIC Network V4 Primers and Whole Genome Sequencing Protocol von Lambisia, Arnold W, Mohammed, Khadija S, Makori, Timothy O, Ndwiga, Leonard, Mburu, Maureen W, Morobe, John M, Moraa, Edidah O, Musyoki, Jennifer, Murunga, Nickson, Mwangi, Jane N, Nokes, D James, Agoti, Charles N, Ochola-Oyier, Lynette Isabella, Githinji, George

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Incidence of chikungunya virus infections among Kenyan children with neurological disease, 2014-2018: A cohort study von Nyamwaya, Doris K, Otiende, Mark, Mwango, Lilian, Kariuki, Symon M, Otieno, Berrick, Omuoyo, Donwilliams O, Githinji, George, Kitsao, Barnes S, Karanja, Henry K, Gitonga, John N, de Laurent, Zaydah R, Davies, Alun, Mwarumba, Salim, Agoti, Charles N, Thumbi, Samuel M, Hamaluba, Mainga M, Newton, Charles R, Bejon, Philip, Warimwe, George M

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The Plasmodium falciparum Rh5 invasion protein complex reveals an excess of rare variant mutations von Ndwiga, Leonard, Osoti, Victor, Ochwedo, Kevin Omondi, Wamae, Kevin, Bejon, Philip, Rayner, Julian C., Githinji, George, Ochola-Oyier, Lynette Isabella

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Endemic chikungunya fever in Kenyan children: a prospective cohort study von Nyamwaya, Doris K., Otiende, Mark, Omuoyo, Donwilliams O., Githinji, George, Karanja, Henry K., Gitonga, John N., de Laurent, Zaydah R., Otieno, James R., Sang, Rosemary, Kamau, Everlyn, Cheruiyot, Stanley, Otieno, Edward, Agoti, Charles N., Bejon, Philip, Thumbi, Samuel M., Warimwe, George M.

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Transmission networks of SARS-CoV-2 in Coastal Kenya during the first two waves: A retrospective genomic study von Agoti, Charles N, Ochola-Oyier, Lynette Isabella, Dellicour, Simon, Mohammed, Khadija Said, Lambisia, Arnold W, de Laurent, Zaydah R, Morobe, John M, Mburu, Maureen W, Omuoyo, Donwilliams O, Ongera, Edidah M, Ndwiga, Leonard, Maitha, Eric, Kitole, Benson, Suleiman, Thani, Mwakinangu, Mohamed, Nyambu, John K, Otieno, John, Salim, Barke, Musyoki, Jennifer, Murunga, Nickson, Otieno, Edward, Kiiru, John N, Kasera, Kadondi, Amoth, Patrick, Mwangangi, Mercy, Aman, Rashid, Kinyanjui, Samson, Warimwe, George, Phan, My, Agweyu, Ambrose, Cotten, Matthew, Barasa, Edwine, Tsofa, Benjamin, Nokes, D James, Bejon, Philip, Githinji, George

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Exploring Plasmodium falciparum Var Gene Expression to Assess Host Selection Pressure on Parasites During Infancy von Kivisi, Cheryl A, Muthui, Michelle, Hunt, Martin, Fegan, Greg, Otto, Thomas Dan, Githinji, George, Warimwe, George M, Rance, Richard, Marsh, Kevin, Bull, Peter C, Abdi, Abdirahman I

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Genomic Epidemiology of SARS-CoV-2 in Seychelles, 2020-2021 von Morobe, John Mwita, Pool, Brigitte, Marie, Lina, Didon, Dwayne, Lambisia, Arnold W, Makori, Timothy, Mohammed, Khadija Said, de Laurent, Zaydah R, Ndwiga, Leonard, Mburu, Maureen W, Moraa, Edidah, Murunga, Nickson, Musyoki, Jennifer, Mwacharo, Jedida, Nyamako, Lydia, Riako, Debra, Ephnatus, Pariken, Gambo, Faith, Naimani, Josephine, Namulondo, Joyce, Tembo, Susan Zimba, Ogendi, Edwin, Balde, Thierno, Dratibi, Fred Athanasius, Yahaya, Ali Ahmed, Gumede, Nicksy, Achilla, Rachel A, Borus, Peter K, Wanjohi, Dorcas W, Tessema, Sofonias K, Mwangangi, Joseph, Bejon, Philip, Nokes, David J, Ochola-Oyier, Lynette Isabella, Githinji, George, Biscornet, Leon, Agoti, Charles N

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A systematic review of Hepatitis B virus (HBV) prevalence and genotypes in Kenya: Data to inform clinical care and health policy von Downs, Louise O, Campbell, Cori, Yonga, Paul, Githinji, George, Ansari, M Azim, Matthews, Philippa C, Etyang, Anthony O

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Where do those data go? Reuse of screening results from clinical trials to estimate population prevalence of HBV infection in adults in Kilifi, Kenya von Downs, Louise O, Campbell, Cori, Abouyannis, Michael, Otiende, Mark, Kapulu, Melissa, Obiero, Christina W, Hamaluba, Mainga, Ngetsa, Caroline, Andersson, Monique I, Githinji, George, Warimwe, George, Baisley, Kathy, Scott, J Anthony G, Matthews, Philippa C, Etyang, Anthony

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A re-assessment of gene-tag classification approaches for describing var gene expression patterns during human Plasmodium falciparum malaria parasite infections von Githinji, George, Bull, Peter C

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Whole-genome sequencing of SARS-CoV-2 isolates from symptomatic and asymptomatic individuals in Tanzania von Mziray, Shabani Ramadhani, van Zwetselaar, Marco, Kayuki, Charles C, Mbelele, Peter M, Makubi, Abel N, Magesa, Alex S, Kisonga, Riziki M, Sonda, Tolbert B, Kibiki, Gibson S, Githinji, George, Heysell, Scott K, Chilongola, Jaffu O, Mpagama, Stellah G

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Journal of Open Source Software (JOSS): design and first-year review von Smith, Arfon M, Niemeyer, Kyle E, Katz, Daniel S, Barba, Lorena A, Githinji, George, Gymrek, Melissa, Huff, Kathryn D, Madan, Christopher R, Mayes, Abigail Cabunoc, Moerman, Kevin M, Prins, Pjotr, Ram, Karthik, Rokem, Ariel, Teal, Tracy K, Guimera, Roman Valls, Vanderplas, Jacob T

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Epidemiology of COVID-19 infections on routine polymerase chain reaction (PCR) and serology testing in Coastal Kenya von Nyagwange, James, Ndwiga, Leonard, Muteru, Kelvin, Wamae, Kevin, Tuju, James, Testing Team, Covid, Kutima, Bernadette, Gitonga, John, Karanja, Henry, Mugo, Daisy, Kasera, Kadondi, Amoth, Patrick, Murunga, Nickson, Babu, Lawrence, Otieno, Edward, Githinji, George, Nokes, D J, Tsofa, Benjamin, Orindi, Benedict, Barasa, Edwine, Warimwe, George, Agoti, Charles N, Bejon, Philip, Ochola-Oyier, Lynette Isabella

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Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics von BONNAL, Raoul J. P, AERTS, Jan, STROZZI, Francesco, SYME, Rob, VOS, Rutger, WENNBLOM, Trevor J, WOODCROFT, Ben J, KATAYAMA, Toshiaki, PRINS, Pjotr, GITHINJI, George, GOTO, Naohisa, MACLEAN, Dan, MILLER, Chase A, MISHIMA, Hiroyuki, PAGANI, Massimiliano, RAMIREZ-GONZALEZ, Ricardo, SMANT, Geert

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Enrichment approach for unbiased sequencing of respiratory syncytial virus directly from clinical samples von Waweru, Jacqueline Wahura, de Laurent, Zaydah, Kamau, Everlyn, Mohammed, Khadija Said, Gicheru, Elijah, Mutunga, Martin, Kibet, Caleb, Kinyua, Johnson, Nokes, D James, Sande, Charles, Githinji, George

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Detection of SARS-CoV-2 variant 501Y.V2 in Comoros Islands in January 2021 von N Agoti, Charles, Githinji, George, S Mohammed, Khadija, W Lambisia, Arnold, R de Laurent, Zaydah, W Mburu, Maureen, M Ong'era, Edidah, M Morobe, John, Otieno, Edward, Abdou Azali, Hamza, Said Abdallah, Kamal, Diarra, Abdoulaye, Ahmed Yahaya, Ali, Borus, Peter, Gumede Moeletsi, Nicksy, Fred Athanasius, Dratibi, Tsofa, Benjamin, Bejon, Philip, James Nokes, D, Isabella Ochola-Oyier, Lynette

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Transmission patterns and evolution of respiratory syncytial virus in a community outbreak identified by genomic analysis von Agoti, Charles N., Munywoki, Patrick K., Phan, My V. T., Otieno, James R., Kamau, Everlyn, Bett, Anne, Kombe, Ivy, Githinji, George, Medley, Graham F., Cane, Patricia A., Kellam, Paul, Cotten, Matthew, Nokes, D. James

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