Cattle Sex-Specific Recombination and Genetic Control from a Large Pedigree Analysis von Ma, Li, O'Connell, Jeffrey R, VanRaden, Paul M, Shen, Botong, Padhi, Abinash, Sun, Chuanyu, Bickhart, Derek M, Cole, John B, Null, Daniel J, Liu, George E, Da, Yang, Wiggans, George R

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Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome von Bickhart, Derek M, Rosen, Benjamin D, Koren, Sergey, Sayre, Brian L, Hastie, Alex R, Chan, Saki, Lee, Joyce, Lam, Ernest T, Liachko, Ivan, Sullivan, Shawn T, Burton, Joshua N, Huson, Heather J, Nystrom, John C, Kelley, Christy M, Hutchison, Jana L, Zhou, Yang, Sun, Jiajie, Crisà, Alessandra, Ponce de León, F Abel, Schwartz, John C, Hammond, John A, Waldbieser, Geoffrey C, Schroeder, Steven G, Liu, George E, Dunham, Maitreya J, Shendure, Jay, Sonstegard, Tad S, Phillippy, Adam M, Van Tassell, Curtis P, Smith, Timothy P L

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GWAS and fine-mapping of livability and six disease traits in Holstein cattle von Freebern, Ellen, Santos, Daniel J A, Fang, Lingzhao, Jiang, Jicai, Parker Gaddis, Kristen L, Liu, George E, VanRaden, Paul M, Maltecca, Christian, Cole, John B, Ma, Li

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Taming transposable elements in livestock and poultry: a review of their roles and applications von Zhao, Pengju, Peng, Chen, Fang, Lingzhao, Wang, Zhengguang, Liu, George E

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Functional annotation of the cattle genome through systematic discovery and characterization of chromatin states and butyrate-induced variations von Fang, Lingzhao, Liu, Shuli, Liu, Mei, Kang, Xiaolong, Lin, Shudai, Li, Bingjie, Connor, Erin E, Baldwin, 6th, Ransom L, Tenesa, Albert, Ma, Li, Liu, George E, Li, Cong-Jun

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CNV discovery for milk composition traits in dairy cattle using whole genome resequencing von Gao, Yahui, Jiang, Jianping, Yang, Shaohua, Hou, Yali, Liu, George E, Zhang, Shengli, Zhang, Qin, Sun, Dongxiao

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LncRNA‐MEG3 promotes bovine myoblast differentiation by sponging miR‐135 von Liu, Mei, Li, Bo, Peng, Wenwen, Ma, Yilei, Huang, Yongzhen, Lan, Xianyong, Lei, Chuzhao, Qi, Xinglei, Liu, George E., Chen, Hong

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Comprehensive transcriptome and methylome analysis delineates the biological basis of hair follicle development and wool-related traits in Merino sheep von Zhao, Bingru, Luo, Hanpeng, He, Junmin, Huang, Xixia, Chen, Siqian, Fu, Xuefeng, Zeng, Weidan, Tian, Yuezhen, Liu, Shuli, Li, Cong-Jun, Liu, George E, Fang, Lingzhao, Zhang, Shengli, Tian, Kechuan

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Mapping and functional characterization of structural variation in 1060 pig genomes von Yang, Liu, Yin, Hongwei, Bai, Lijing, Yao, Wenye, Tao, Tan, Zhao, Qianyi, Gao, Yahui, Teng, Jinyan, Xu, Zhiting, Lin, Qing, Diao, Shuqi, Pan, Zhangyuan, Guan, Dailu, Li, Bingjie, Zhou, Huaijun, Zhou, Zhongyin, Zhao, Fuping, Wang, Qishan, Pan, Yuchun, Zhang, Zhe, Li, Kui, Fang, Lingzhao, Liu, George E

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Identification and population genetic analyses of copy number variations in six domestic goat breeds and Bezoar ibexes using next-generation sequencing von Guo, Jiazhong, Zhong, Jie, Liu, George E, Yang, Liu, Li, Li, Chen, Guangling, Song, Tianzeng, Zhang, Hongping

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Copy number variation of individual cattle genomes using next-generation sequencing von Bickhart, Derek M, Hou, Yali, Schroeder, Steven G, Alkan, Can, Cardone, Maria Francesca, Matukumalli, Lakshmi K, Song, Jiuzhou, Schnabel, Robert D, Ventura, Mario, Taylor, Jeremy F, Garcia, Jose Fernando, Van Tassell, Curtis P, Sonstegard, Tad S, Eichler, Evan E, Liu, George E

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Epigenomics and genotype-phenotype association analyses reveal conserved genetic architecture of complex traits in cattle and human von Liu, Shuli, Yu, Ying, Zhang, Shengli, Cole, John B, Tenesa, Albert, Wang, Ting, McDaneld, Tara G, Ma, Li, Liu, George E, Fang, Lingzhao

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Array CGH-based detection of CNV regions and their potential association with reproduction and other economic traits in Holsteins von Liu, Mei, Fang, Lingzhao, Liu, Shuli, Pan, Michael G, Seroussi, Eyal, Cole, John B, Ma, Li, Chen, Hong, Liu, George E

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Genomic characteristics of cattle copy number variations von Hou, Yali, Liu, George E, Bickhart, Derek M, Cardone, Maria Francesca, Wang, Kai, Kim, Eui-Soo, Matukumalli, Lakshmi K, Ventura, Mario, Song, Jiuzhou, VanRaden, Paul M, Sonstegard, Tad S, Van Tassell, Curt P

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Genome-wide copy number variant analysis reveals variants associated with 10 diverse production traits in Holstein cattle von Zhou, Yang, Connor, Erin E, Wiggans, George R, Lu, Yongfang, Tempelman, Robert J, Schroeder, Steven G, Chen, Hong, Liu, George E

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Structural variant landscapes reveal convergent signatures of evolution in sheep and goats von Yang, Ji, Wang, Dong-Feng, Huang, Jia-Hui, Zhu, Qiang-Hui, Luo, Ling-Yun, Lu, Ran, Xie, Xing-Long, Salehian-Dehkordi, Hosein, Esmailizadeh, Ali, Liu, George E, Li, Meng-Hua

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Comparative whole genome DNA methylation profiling across cattle tissues reveals global and tissue-specific methylation patterns von Zhou, Yang, Liu, Shuli, Hu, Yan, Fang, Lingzhao, Gao, Yahui, Xia, Han, Schroeder, Steven G, Rosen, Benjamin D, Connor, Erin E, Li, Cong-Jun, Baldwin, Ransom L, Cole, John B, Van Tassell, Curtis P, Yang, Liguo, Ma, Li, Liu, George E

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Genome-wide association analysis of heifer livability and early first calving in Holstein cattle von Gao, Yahui, Marceau, Alexis, Iqbal, Victoria, Torres-Vázquez, Jose Antonio, Neupane, Mahesh, Jiang, Jicai, Liu, George E, Ma, Li

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Genome-wide association study reveals 14 new SNPs and confirms two structural variants highly associated with the horned/polled phenotype in goats von Guo, Jiazhong, Jiang, Rui, Mao, Ayi, Liu, George E, Zhan, Siyuan, Li, Li, Zhong, Tao, Wang, Linjie, Cao, Jiaxue, Chen, Yu, Zhang, Guojun, Zhang, Hongping

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Comparative analyses of copy number variations between Bos taurus and Bos indicus von Hu, Yan, Xia, Han, Li, Mingxun, Xu, Chang, Ye, Xiaowei, Su, Ruixue, Zhang, Mai, Nash, Oyekanmi, Sonstegard, Tad S, Yang, Liguo, Liu, George E, Zhou, Yang

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