Monolayer culture alters EGFR inhibitor response through abrogation of microRNA-mediated feedback regulation von Florio, Angela, Johnson, Sarah, Salvatori, Rebecca, Vasmatzis, George

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Fibroblast growth factor receptor 2 translocations in intrahepatic cholangiocarcinoma von Graham, Rondell P., MBBS, Barr Fritcher, Emily G, Pestova, Ekaterina, PhD, Schulz, John, Sitailo, Leonid A., PhD, Vasmatzis, George, PhD, Murphy, Stephen J., PhD, McWilliams, Robert R., MD, Hart, Steven N., PhD, Halling, Kevin C., MD, PhD, Roberts, Lewis R., MB, ChB, PhD, Gores, Gregory J., MD, Couch, Fergus J., PhD, Zhang, Lizhi, MD, Borad, Mitesh J., MD, Kipp, Benjamin R., PhD

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Heterogeneity of Programmed Cell Death Ligand 1 Expression in Multifocal Lung Cancer von Mansfield, Aaron S, Murphy, Stephen J, Peikert, Tobias, Yi, Eunhee S, Vasmatzis, George, Wigle, Dennis A, Aubry, Marie Christine

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YAP Tyrosine Phosphorylation and Nuclear Localization in Cholangiocarcinoma Cells Are Regulated by LCK and Independent of LATS Activity von Sugihara, Takaaki, Werneburg, Nathan W, Hernandez, Matthew C, Yang, Lin, Kabashima, Ayano, Hirsova, Petra, Yohanathan, Lavanya, Sosa, Carlos, Truty, Mark J, Vasmatzis, George, Gores, Gregory J, Smoot, Rory L

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Genetic variants and risk of lung cancer in never smokers: a genome-wide association study von Li, Yafei, PhD, Sheu, Chau-Chyun, MD, Ye, Yuanqing, PhD, de Andrade, Mariza, Prof, Wang, Liang, PhD, Chang, Shen-Chih, PhD, Aubry, Marie C, MD, Aakre, Jeremiah A, BS, Allen, Mark S, Prof, Chen, Feng, PhD, Cunningham, Julie M, PhD, Deschamps, Claude, Prof, Jiang, Ruoxiang, BS, Lin, Jie, PhD, Marks, Randolph S, MD, Pankratz, V Shane, PhD, Su, Li, BS, Li, Yan, MD, Sun, Zhifu, MD, Tang, Hui, PhD, Vasmatzis, George, PhD, Harris, Curtis C, MD, Spitz, Margaret R, Prof, Jen, Jin, PhD, Wang, Renyi, MPH, Zhang, Zuo-Feng, Prof, Christiani, David C, Prof, Wu, Xifeng, Prof, Yang, Ping, Dr, Prof

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Evaluating NetMHCpan performance on non-European HLA alleles not present in training data von Atkins, Thomas Karl, Solanki, Arnav, Vasmatzis, George, Cornette, James, Riedel, Marc

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Enhanced mRNA FISH with compact quantum dots von Liu, Yang, Le, Phuong, Lim, Sung Jun, Ma, Liang, Sarkar, Suresh, Han, Zhiyuan, Murphy, Stephen J., Kosari, Farhad, Vasmatzis, George, Cheville, John C., Smith, Andrew M.

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Hydrophobicity identifies false positives and false negatives in peptide-MHC binding von Solanki, Arnav, Riedel, Marc, Cornette, James, Udell, Julia, Vasmatzis, George

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Truncated ERG Oncoproteins from TMPRSS2-ERG Fusions Are Resistant to SPOP-Mediated Proteasome Degradation von An, Jian, Ren, Shancheng, Murphy, Stephen J., Dalangood, Sumiya, Chang, Cunjie, Pang, Xiaodong, Cui, Yangyan, Wang, Liguo, Pan, Yunqian, Zhang, Xiaowei, Zhu, Yasheng, Wang, Chenji, Halling, Geoffrey C., Cheng, Liang, Sukov, William R., Karnes, R. Jeffrey, Vasmatzis, George, Zhang, Qing, Zhang, Jun, Cheville, John C., Yan, Jun, Sun, Yinghao, Huang, Haojie

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Nanopore-Based Assay for Detection of Methylation in Double-Stranded DNA Fragments von Shim, Jiwook, Kim, Younghoon, Humphreys, Gwendolyn I, Nardulli, Ann M, Kosari, Farhad, Vasmatzis, George, Taylor, William R, Ahlquist, David A, Myong, Sua, Bashir, Rashid

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Neoantigenic Potential of Complex Chromosomal Rearrangements in Mesothelioma von Mansfield, Aaron S., Peikert, Tobias, Smadbeck, James B., Udell, Julia B.M., Garcia-Rivera, Enrique, Elsbernd, Laura, Erskine, Courtney L., Van Keulen, Virginia P., Kosari, Farhad, Murphy, Stephen J., Ren, Hongzheng, Serla, Vishnu V., Schaefer Klein, Janet L., Karagouga, Giannoula, Harris, Faye R., Sosa, Carlos, Johnson, Sarah H., Nevala, Wendy, Markovic, Svetomir N., Bungum, Aaron O., Edell, Eric S., Dong, Haidong, Cheville, John C., Aubry, Marie Christine, Jen, Jin, Vasmatzis, George

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UCH-L1 bypasses mTOR to promote protein biosynthesis and is required for MYC-driven lymphomagenesis in mice von Hussain, Sajjad, Bedekovics, Tibor, Liu, Qiuying, Hu, Wenqian, Jeon, Haeseung, Johnson, Sarah H., Vasmatzis, George, May, Danielle G., Roux, Kyle J., Galardy, Paul J.

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Identification of independent primary tumors and intrapulmonary metastases using DNA rearrangements in non-small-cell lung cancer von Murphy, Stephen J, Aubry, Marie-Christine, Harris, Faye R, Halling, Geoffrey C, Johnson, Sarah H, Terra, Simone, Drucker, Travis M, Asiedu, Michael K, Kipp, Benjamin R, Yi, Eunhee S, Peikert, Tobias, Yang, Ping, Vasmatzis, George, Wigle, Dennis A

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Pathways Impacted by Genomic Alterations in Pulmonary Carcinoid Tumors von Asiedu, Michael K, Thomas, Jr, Charles F, Dong, Jie, Schulte, Sandra C, Khadka, Prasidda, Sun, Zhifu, Kosari, Farhad, Jen, Jin, Molina, Julian, Vasmatzis, George, Kuang, Ray, Aubry, Marie Christine, Yang, Ping, Wigle, Dennis A

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Detection and Quantification of Methylation in DNA using Solid-State Nanopores von Shim, Jiwook, Humphreys, Gwendolyn I., Venkatesan, Bala Murali, Munz, Jan Marie, Zou, Xueqing, Sathe, Chaitanya, Schulten, Klaus, Kosari, Farhad, Nardulli, Ann M., Vasmatzis, George, Bashir, Rashid

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Evaluation of tumor response to immune checkpoint inhibitors by a 3D immunotumoroid model von Pezeshki, Abdulmohammad, Cheville, John C, Florio, Angela B, Leibovich, Bradley C, Vasmatzis, George

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Trinucleotide Repeat Expansion in the Transcription Factor 4 (TCF4) Gene Leads to Widespread mRNA Splicing Changes in Fuchs' Endothelial Corneal Dystrophy von Wieben, Eric D, Aleff, Ross A, Tang, Xiaojia, Butz, Malinda L, Kalari, Krishna R, Highsmith, Edward W, Jen, Jin, Vasmatzis, George, Patel, Sanjay V, Maguire, Leo J, Baratz, Keith H, Fautsch, Michael P

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Topoisomerase 2 Alpha Cooperates with Androgen Receptor to Contribute to Prostate Cancer Progression von Schaefer-Klein, J L, Murphy, Stephen J, Johnson, Sarah H, Vasmatzis, George, Kovtun, Irina V

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Targeted next generation sequencing of endoscopic ultrasound acquired cytology from ampullary and pancreatic adenocarcinoma has the potential to aid patient stratification for opti... von Gleeson, Ferga C, Kerr, Sarah E, Kipp, Benjamin R, Voss, Jesse S, Minot, Douglas M, Tu, Zheng Jin, Henry, Michael R, Graham, Rondell P, Vasmatzis, George, Cheville, John C, Lazaridis, Konstantinos N, Levy, Michael J

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Common fragile sites (CFS) and extremely large CFS genes are targets for human papillomavirus integrations and chromosome rearrangements in oropharyngeal squamous cell carcinoma von Gao, Ge, Johnson, Sarah H, Vasmatzis, George, Pauley, Christina E, Tombers, Nicole M., Kasperbauer, Jan L, Smith, David I.

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