CheckM2: a rapid, scalable and accurate tool for assessing microbial genome quality using machine learning von Chklovski, Alex, Parks, Donovan H., Woodcroft, Ben J., Tyson, Gene W.

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CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes von Parks, Donovan H, Imelfort, Michael, Skennerton, Connor T, Hugenholtz, Philip, Tyson, Gene W

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STAMP: statistical analysis of taxonomic and functional profiles von Parks, Donovan H, Tyson, Gene W, Hugenholtz, Philip, Beiko, Robert G

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Anaerobic methane oxidation coupled to manganese reduction by members of the Methanoperedenaceae von Leu, Andy O., Cai, Chen, McIlroy, Simon J., Southam, Gordon, Orphan, Victoria J., Yuan, Zhiguo, Hu, Shihu, Tyson, Gene W.

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Methane metabolism in the archaeal phylum Bathyarchaeota revealed by genome-centric metagenomics von Evans, Paul N., Parks, Donovan H., Chadwick, Grayson L., Robbins, Steven J., Orphan, Victoria J., Golding, Suzanne D., Tyson, Gene W.

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Microbiology: metagenomics von Hugenholtz, Philip, Tyson, Gene W

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A methanotrophic archaeon couples anaerobic oxidation of methane to Fe(III) reduction von Cai, Chen, Leu, Andy O, Xie, Guo-Jun, Guo, Jianhua, Feng, Yuexing, Zhao, Jian-Xin, Tyson, Gene W, Yuan, Zhiguo, Hu, Shihu

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Anaerobic oxidation of methane coupled to nitrate reduction in a novel archaeal lineage von Haroon, Mohamed F., Hu, Shihu, Shi, Ying, Imelfort, Michael, Keller, Jurg, Hugenholtz, Philip, Yuan, Zhiguo, Tyson, Gene W.

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Fast, accurate error-correction of amplicon pyrosequences using Acacia von Bragg, Lauren, Stone, Glenn, Imelfort, Michael, Hugenholtz, Philip, Tyson, Gene W

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Linking microbial community structure, interactions and function in anaerobic digesters using new molecular techniques von Vanwonterghem, Inka, Jensen, Paul D, Ho, Dang P, Batstone, Damien J, Tyson, Gene W

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Genome-centric resolution of microbial diversity, metabolism and interactions in anaerobic digestion von Vanwonterghem, Inka, Jensen, Paul D., Rabaey, Korneel, Tyson, Gene W.

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Shining a light on dark sequencing: characterising errors in Ion Torrent PGM data von Bragg, Lauren M, Stone, Glenn, Butler, Margaret K, Hugenholtz, Philip, Tyson, Gene W

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Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life von Parks, Donovan H., Rinke, Christian, Chuvochina, Maria, Chaumeil, Pierre-Alain, Woodcroft, Ben J., Evans, Paul N., Hugenholtz, Philip, Tyson, Gene W.

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Selective Enrichment Establishes a Stable Performing Community for Microbial Electrosynthesis of Acetate from CO2 von Patil, Sunil A, Arends, Jan B. A, Vanwonterghem, Inka, van Meerbergen, Jarne, Guo, Kun, Tyson, Gene W, Rabaey, Korneel

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A phylogenomic and ecological analysis of the globally abundant Marine Group II archaea (Ca. Poseidoniales ord. nov.) von Rinke, Christian, Rubino, Francesco, Messer, Lauren F., Youssef, Noha, Parks, Donovan H., Chuvochina, Maria, Brown, Mark, Jeffries, Thomas, Tyson, Gene W., Seymour, Justin R., Hugenholtz, Philip

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Temperature and solids retention time control microbial population dynamics and volatile fatty acid production in replicated anaerobic digesters von Vanwonterghem, Inka, Jensen, Paul D., Rabaey, Korneel, Tyson, Gene W.

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Methane dynamics regulated by microbial community response to permafrost thaw von McCalley, Carmody K., Woodcroft, Ben J., Hodgkins, Suzanne B., Wehr, Richard A., Kim, Eun-Hae, Mondav, Rhiannon, Crill, Patrick M., Chanton, Jeffrey P., Rich, Virginia I., Tyson, Gene W., Saleska, Scott R.

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Crass: identification and reconstruction of CRISPR from unassembled metagenomic data von Skennerton, Connor T, Imelfort, Michael, Tyson, Gene W

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Genome-centric view of carbon processing in thawing permafrost von Woodcroft, Ben J., Singleton, Caitlin M., Boyd, Joel A., Evans, Paul N., Emerson, Joanne B., Zayed, Ahmed A. F., Hoelzle, Robert D., Lamberton, Timothy O., McCalley, Carmody K., Hodgkins, Suzanne B., Wilson, Rachel M., Purvine, Samuel O., Nicora, Carrie D., Li, Changsheng, Frolking, Steve, Chanton, Jeffrey P., Crill, Patrick M., Saleska, Scott R., Rich, Virginia I., Tyson, Gene W.

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Rapidly evolving CRISPRs implicated in acquired resistance of microorganisms to viruses von Tyson, Gene W, Banfield, Jillian F

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