Stable antibiotic resistance and rapid human adaptation in livestock-associated MRSA von Matuszewska, Marta, Murray, Gemma G R, Ba, Xiaoliang, Wood, Rhiannon, Holmes, Mark A, Weinert, Lucy A

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Mutation rate dynamics reflect ecological change in an emerging zoonotic pathogen von Murray, Gemma G R, Balmer, Andrew J, Herbert, Josephine, Hadjirin, Nazreen F, Kemp, Caroline L, Matuszewska, Marta, Bruchmann, Sebastian, Hossain, A S Md Mukarram, Gottschalk, Marcelo, Tucker, Alexander W, Miller, Eric, Weinert, Lucy A

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Mutational spectra are associated with bacterial niche von Ruis, Christopher, Weimann, Aaron, Tonkin-Hill, Gerry, Pandurangan, Arun Prasad, Matuszewska, Marta, Murray, Gemma G. R., Lévesque, Roger C., Blundell, Tom L., Floto, R. Andres, Parkhill, Julian

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Large-scale genomic analysis of antimicrobial resistance in the zoonotic pathogen Streptococcus suis von Hadjirin, Nazreen F, Miller, Eric L, Murray, Gemma G R, Yen, Phung L K, Phuc, Ho D, Wileman, Thomas M, Hernandez-Garcia, Juan, Williamson, Susanna M, Parkhill, Julian, Maskell, Duncan J, Zhou, Rui, Fittipaldi, Nahuel, Gottschalk, Marcelo, Tucker, A W Dan, Hoa, Ngo Thi, Welch, John J, Weinert, Lucy A

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The effect of genetic structure on molecular dating and tests for temporal signal von Murray, Gemma G. R., Wang, Fang, Harrison, Ewan M., Paterson, Gavin K., Mather, Alison E., Harris, Simon R., Holmes, Mark A., Rambaut, Andrew, Welch, John J., Gilbert, M.

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Zooming into the structure of the microbiome von Murray, Gemma G. R., Chaguza, Chrispin

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The Evolutionary Genomics of Host Specificity in Staphylococcus aureus von Matuszewska, Marta, Murray, Gemma G.R., Harrison, Ewan M., Holmes, Mark A., Weinert, Lucy A.

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A polar bear paleogenome reveals extensive ancient gene flow from polar bears into brown bears von Wang, Ming-Shan, Murray, Gemma G. R., Mann, Daniel, Groves, Pamela, Vershinina, Alisa O., Supple, Megan A., Kapp, Joshua D., Corbett-Detig, Russell, Crump, Sarah E., Stirling, Ian, Laidre, Kristin L., Kunz, Michael, Dalén, Love, Green, Richard E., Shapiro, Beth

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Prevalence, antimicrobial resistance and genomic comparison of non-typhoidal salmonella isolated from pig farms with different levels of intensification in Yangon Region, Myanmar von Trung, Nguyen Vinh, Zaw Moe, Aung, May Than, Hlaing, Bich Chieu, Tran Thi, Mukarram Hossain, A S Md, Trung Thanh, Nguyen, Yen, Huynh Xuan, Yen, Phung Le Kim, Nghia, Nguyen Huu, Murray, Gemma G R, Su Wai, Thiri, Thein Maw, Min, Myint, Hnin Thidar, Win, Ye Tun, Wood, James, Thwaites, Guy, Maskell, Duncan J, Tucker, Alexander W, Hoa, Ngo Thi

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Inference of natural selection from ancient DNA von Dehasque, Marianne, Ávila‐Arcos, María C., Díez‐del‐Molino, David, Fumagalli, Matteo, Guschanski, Katerina, Lorenzen, Eline D., Malaspinas, Anna‐Sapfo, Marques‐Bonet, Tomas, Martin, Michael D., Murray, Gemma G. R., Papadopulos, Alexander S. T., Therkildsen, Nina Overgaard, Wegmann, Daniel, Dalén, Love, Foote, Andrew D.

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Suppressors of RNAi from plant viruses are subject to episodic positive selection von Murray, Gemma G. R., Kosakovsky Pond, Sergei L., Obbard, Darren J.

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Absence of Staphylococcus aureus in Wild Populations of Fish Supports a Spillover Hypothesis von Matuszewska, Marta, Dabrowska, Alicja, Murray, Gemma G R, Kett, Steve M, Vick, Andy J A, Banister, Sofie C, Pantoja Munoz, Leonardo, Cunningham, Peter, Welch, John J, Holmes, Mark A, Weinert, Lucy A

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Genome Reduction Is Associated with Bacterial Pathogenicity across Different Scales of Temporal and Ecological Divergence von Murray, Gemma G R, Charlesworth, Jane, Miller, Eric L, Casey, Michael J, Lloyd, Catrin T, Gottschalk, Marcelo, Tucker, Alexander W (Dan), Welch, John J, Weinert, Lucy A

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The evolution, diversity, and host associations of rhabdoviruses von Longdon, Ben, Murray, Gemma G. R., Palmer, William J., Day, Jonathan P., Parker, Darren J, Welch, John J., Obbard, Darren J., Jiggins, Francis M.

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Natural selection shaped the rise and fall of passenger pigeon genomic diversity von Murray, Gemma G. R., Soares, André E. R., Novak, Ben J., Schaefer, Nathan K., Cahill, James A., Baker, Allan J., Demboski, John R., Doll, Andrew, Da Fonseca, Rute R., Fulton, Tara L., Gilbert, M. Thomas P., Heintzman, Peter D., Letts, Brandon, McIntosh, George, O’Connell, Brendan L., Peck, Mark, Pipes, Marie-Lorraine, Rice, Edward S., Santos, Kathryn M., Sohrweide, A. Gregory, Vohr, Samuel H., Corbett-Detig, Russell B., Green, Richard E., Shapiro, Beth

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The Phylogeny of Rickettsia Using Different Evolutionary Signatures: How Tree-Like is Bacterial Evolution? von Murray, Gemma G. R., Weinert, Lucy A., Rhule, Emma L., Welch, John J.

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Genetic susceptibility to infectious disease in East African Shorthorn Zebu: a genome-wide analysis of the effect of heterozygosity and exotic introgression von Murray, Gemma G R, Woolhouse, Mark E J, Tapio, Miika, Mbole-Kariuki, Mary N, Sonstegard, Tad S, Thumbi, Samuel M, Jennings, Amy E, van Wyk, Ilana Conradie, Chase-Topping, Margo, Kiara, Henry, Toye, Phil, Coetzer, Koos, deC Bronsvoort, Barend M, Hanotte, Olivier

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Variation in bacterial pathotype is consistent with the sit-and-wait hypothesis von Rayner, Eliza, Lavenir, Amelie, Murray, Gemma G R, Matusewska, Marta, Tucker, Alexander W, Welch, John J, Weinert, Lucy A

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Capturing the cloud of diversity reveals complexity and heterogeneity of MRSA carriage, infection and transmission von Paterson, Gavin K., Harrison, Ewan M., Murray, Gemma G. R., Welch, John J., Warland, James H., Holden, Matthew T. G., Morgan, Fiona J. E., Ba, Xiaoliang, Koop, Gerrit, Harris, Simon R., Maskell, Duncan J., Peacock, Sharon J., Herrtage, Michael E., Parkhill, Julian, Holmes, Mark A.

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The emergence and diversification of a zoonotic pathogen from within the microbiota of intensively farmed pigs von Murray, Gemma G R, Hossain, A S Md Mukarram, Miller, Eric L, Bruchmann, Sebastian, Balmer, Andrew J, Matuszewska, Marta, Herbert, Josephine, Hadjirin, Nazreen F, Mugabi, Robert, Li, Ganwu, Ferrando, Maria Laura, Fernandes de Oliveira, Isabela Maria, Nguyen, Thanh, Yen, Phung L K, Phuc, Ho D, Zaw Moe, Aung, Su Wai, Thiri, Gottschalk, Marcelo, Aragon, Virginia, Valentin-Weigand, Peter, Heegaard, Peter M H, Vrieling, Manouk, Thein Maw, Min, Thidar Myint, Hnin, Tun Win, Ye, Thi Hoa, Ngo, Bentley, Stephen D, Clavijo, Maria J, Wells, Jerry M, Tucker, Alexander W, Weinert, Lucy A

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