BioExcel Building Blocks Workflows (BioBB-Wfs), an integrated web-based platform for biomolecular simulations von Bayarri, Genís, Andrio, Pau, Hospital, Adam, Orozco, Modesto, Gelpí, Josep Lluís

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The Multiple Roles of Waters in Protein Solvation von Hospital, Adam, Candotti, Michela, Gelpí, Josep Lluís, Orozco, Modesto

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A new paradigm for molecular dynamics databases: the COVID-19 database, the legacy of a titanic community effort von Beltrán, Daniel, Hospital, Adam, Gelpí, Josep Lluís, Orozco, Modesto

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Evidence for transcript networks composed of chimeric RNAs in human cells von Djebali, Sarah, Lagarde, Julien, Kapranov, Philipp, Lacroix, Vincent, Borel, Christelle, Mudge, Jonathan M, Howald, Cédric, Foissac, Sylvain, Ucla, Catherine, Chrast, Jacqueline, Ribeca, Paolo, Martin, David, Murray, Ryan R, Yang, Xinping, Ghamsari, Lila, Lin, Chenwei, Bell, Ian, Dumais, Erica, Drenkow, Jorg, Tress, Michael L, Gelpí, Josep Lluís, Orozco, Modesto, Valencia, Alfonso, van Berkum, Nynke L, Lajoie, Bryan R, Vidal, Marc, Stamatoyannopoulos, John, Batut, Philippe, Dobin, Alex, Harrow, Jennifer, Hubbard, Tim, Dekker, Job, Frankish, Adam, Salehi-Ashtiani, Kourosh, Reymond, Alexandre, Antonarakis, Stylianos E, Guigó, Roderic, Gingeras, Thomas R

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Genome-wide pathway analysis identifies VEGF pathway association with oral ulceration in systemic lupus erythematosus von Aterido, Adrià, Julià, Antonio, Carreira, Patricia, Blanco, Ricardo, López-Longo, José Javier, Venegas, José Javier Pérez, Olivé, Àlex, Andreu, José Luís, Aguirre-Zamorano, Maria Ángeles, Vela, Paloma, Nolla, Joan M, Marenco-de la Fuente, José Luís, Zea, Antonio, Pego, José María, Freire, Mercedes, Díez, Elvira, López-Lasanta, María, López-Corbeto, Mireia, Palau, Núria, Tortosa, Raül, Gelpí, Josep Lluís, Absher, Devin, Myers, Richard M, Fernández-Nebro, Antonio, Marsal, Sara

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FAIRsoft-a practical implementation of FAIR principles for research software von Martín Del Pico, Eva, Gelpí, Josep Lluís, Capella-Gutierrez, Salvador

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Surviving the deluge of biosimulation data von Hospital, Adam, Battistini, Federica, Soliva, Robert, Gelpí, Josep Lluis, Orozco, Modesto

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PMUT: a web-based tool for the annotation of pathological mutations on proteins von Ferrer-Costa, Carles, Gelpí, Josep Lluis, Zamakola, Leire, Parraga, Ivan, de la Cruz, Xavier, Orozco, Modesto

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Parmbsc1: a refined force field for DNA simulations von Ivani, Ivan, Dans, Pablo D, Noy, Agnes, Pérez, Alberto, Faustino, Ignacio, Hospital, Adam, Walther, Jürgen, Andrio, Pau, Goñi, Ramon, Balaceanu, Alexandra, Portella, Guillem, Battistini, Federica, Gelpí, Josep Lluis, González, Carlos, Vendruscolo, Michele, Laughton, Charles A, Harris, Sarah A, Case, David A, Orozco, Modesto

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PACSAB: Coarse-Grained Force Field for the Study of Protein–Protein Interactions and Conformational Sampling in Multiprotein Systems von Emperador, Agustí, Sfriso, Pedro, Villarreal, Marcos Ariel, Gelpí, Josep Lluis, Orozco, Modesto

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Metadata to Describe Genomic Information von Delgado, Jaime, Naro, Daniel, Llorente, Silvia, Gelpí, Josep Lluís, Royo, Romina

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Long-timescale dynamics of the Drew-Dickerson dodecamer von Dans, Pablo D, Danilāne, Linda, Ivani, Ivan, Dršata, Tomáš, Lankaš, Filip, Hospital, Adam, Walther, Jürgen, Pujagut, Ricard Illa, Battistini, Federica, Gelpí, Josep Lluis, Lavery, Richard, Orozco, Modesto

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Using interactive Jupyter Notebooks and BioConda for FAIR and reproducible biomolecular simulation workflows von Bayarri, Genís, Andrio, Pau, Gelpí, Josep Lluís, Hospital, Adam, Orozco, Modesto

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Bioactive Conformational Ensemble Server and Database. A Public Framework to Speed Up In Silico Drug Discovery von Zivanovic, Sanja, Bayarri, Genís, Colizzi, Francesco, Moreno, David, Gelpí, Josep Lluís, Soliva, Robert, Hospital, Adam, Orozco, Modesto

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MDWeb and MDMoby: an integrated web-based platform for molecular dynamics simulations von HOSPITAL, Adam, ANDRIO, Pau, FENOLLOSA, Carles, CICIN-SAIN, Damjan, OROZCO, Modesto, LLUIS GELPI, Josep

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RegulonDB v12.0: a comprehensive resource of transcriptional regulation in E. coli K-12 von Salgado, Heladia, Gelpí, Josep Lluís, Collado Vides, Pedro Julio

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PMut: a web-based tool for the annotation of pathological variants on proteins, 2017 update von López-Ferrando, Víctor, Gazzo, Andrea, de la Cruz, Xavier, Orozco, Modesto, Gelpí, Josep Ll

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Exploring Early Stages of the Chemical Unfolding of Proteins at the Proteome Scale: e1003393 von Candotti, Michela, Pérez, Alberto, Ferrer-Costa, Carles, Rueda, Manuel, Meyer, Tim, Gelpí, Josep Lluís, Orozco, Modesto

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High-Throughput Prediction of the Impact of Genetic Variability on Drug Sensitivity and Resistance Patterns for Clinically Relevant Epidermal Growth Factor Receptor Mutations from... von Suriñach, Aristarc, Hospital, Adam, Westermaier, Yvonne, Jordà, Luis, Orozco-Ruiz, Sergi, Beltrán, Daniel, Colizzi, Francesco, Andrio, Pau, Soliva, Robert, Municoy, Martí, Gelpí, Josep Lluís, Orozco, Modesto

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MoDEL (Molecular Dynamics Extended Library): A Database of Atomistic Molecular Dynamics Trajectories von Meyer, Tim, D'Abramo, Marco, Hospital, Adam, Rueda, Manuel, Ferrer-Costa, Carles, Pérez, Alberto, Carrillo, Oliver, Camps, Jordi, Fenollosa, Carles, Repchevsky, Dmitry, Gelpí, Josep Lluis, Orozco, Modesto

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