The BUS Format for Single-Cell RNA-Seq Processing and Analysis von Gao, Fan, da Veiga Beltrame, Eduardo, Gehring, Jase A, Edljarn Hjoerleifsson, Kristin E, Lu, Lambda, Melsted, Paull, Ntranos, Vasilis, Pachter, Lior, Svensson, Valentine

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Gehring et al 2019 Multiplexed Data h5ad von Jase Gehring

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Highly Multiplexed single-cell RNA-seq by DNA oligonucleotide tagging of cellular proteins von Jase Gehring

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Defining the core Arabidopsis thaliana root microbiome von Lundberg, Derek S., Lebeis, Sarah L., Paredes, Sur Herrera, Yourstone, Scott, Gehring, Jase, Malfatti, Stephanie, Tremblay, Julien, Engelbrektson, Anna, Kunin, Victor, Rio, Tijana Glavina del, Edgar, Robert C., Eickhorst, Thilo, Ley, Ruth E., Hugenholtz, Philip, Tringe, Susannah Green, Dangl, Jeffery L.

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Highly multiplexed single-cell RNA-seq by DNA oligonucleotide tagging of cellular proteins von Gehring, Jase, Hwee Park, Jong, Chen, Sisi, Thomson, Matthew, Pachter, Lior

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Salicylic acid modulates colonization of the root microbiome by specific bacterial taxa von Lebeis, Sarah L., Paredes, Sur Herrera, Lundberg, Derek S., Breakfield, Natalie, Gehring, Jase, McDonald, Meredith, Malfatti, Stephanie, del Rio, Tijana Glavina, Jones, Corbin D., Tringe, Susannah G., Dangl, Jeffery L.

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Modular, efficient and constant-memory single-cell RNA-seq preprocessing von Melsted, Páll, Booeshaghi, A. Sina, Liu, Lauren, Gao, Fan, Lu, Lambda, Min, Kyung Hoi (Joseph), da Veiga Beltrame, Eduardo, Hjörleifsson, Kristján Eldjárn, Gehring, Jase, Pachter, Lior

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Reliable and accurate diagnostics from highly multiplexed sequencing assays von Booeshaghi, A. Sina, Lubock, Nathan B., Cooper, Aaron R., Simpkins, Scott W., Bloom, Joshua S., Gehring, Jase, Luebbert, Laura, Kosuri, Sri, Pachter, Lior

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Author Correction: Principles of open source bioinstrumentation applied to the poseidon syringe pump system von Booeshaghi, A. Sina, Beltrame, Eduardo da Veiga, Bannon, Dylan, Gehring, Jase, Pachter, Lior

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Spatiotemporal dynamics of the developing zebrafish enteric nervous system at the whole-organ level von Li, Can, Gehring, Jase, Bronner, Marianne E

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Principles of open source bioinstrumentation applied to the poseidon syringe pump system von Booeshaghi, A. Sina, Beltrame, Eduardo da Veiga, Bannon, Dylan, Gehring, Jase, Pachter, Lior

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Engineering Orthogonal Polypeptide GalNAc-Transferase and UDP-Sugar Pairs von Choi, Junwon, Wagner, Lauren J. S, Timmermans, Suzanne B. P. E, Malaker, Stacy A, Schumann, Benjamin, Gray, Melissa A, Debets, Marjoke F, Takashima, Megumi, Gehring, Jase, Bertozzi, Carolyn R

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Whole-animal multiplexed single-cell RNA-seq reveals transcriptional shifts across Clytia medusa cell types von Chari, Tara, Weissbourd, Brandon, Gehring, Jase, Ferraioli, Anna, Leclère, Lucas, Herl, Makenna, Gao, Fan, Chevalier, Sandra, Copley, Richard R, Houliston, Evelyn, Anderson, David J, Pachter, Lior

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Low-cost, scalable, and automated fluid sampling for fluidics applications von Booeshaghi, A. Sina, Kil, Yeokyoung (Anne), Min, Kyung Hoi (Joseph), Gehring, Jase, Pachter, Lior

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SwabExpress: An End-to-End Protocol for Extraction-Free COVID-19 Testing von Srivatsan, Sanjay, Heidl, Sarah, Pfau, Brian, Martin, Beth K, Han, Peter D, Zhong, Weizhi, van Raay, Katrina, McDermot, Evan, Opsahl, Jordan, Gamboa, Luis, Smith, Nahum, Truong, Melissa, Cho, Shari, Barrow, Kaitlyn A, Rich, Lucille M, Stone, Jeremy, Wolf, Caitlin R, McCulloch, Denise J, Kim, Ashley E, Brandstetter, Elisabeth, Sohlberg, Sarah L, Ilcisin, Misja, Geyer, Rachel E, Chen, Wei, Gehring, Jase, Kosuri, Sriram, Bedford, Trevor, Rieder, Mark J, Nickerson, Deborah A, Chu, Helen Y, Konnick, Eric Q, Debley, Jason S, Shendure, Jay, Lockwood, Christina M, Starita, Lea M

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Quantifying orthogonal barcodes for sequence census assays von Booeshaghi, A Sina, Min, Kyung Hoi (Joseph), Gehring, Jase, Pachter, Lior

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Introduction to single-cell RNA-seq technologies von Beltrame, Eduardo Da Veiga, Jase Gehring, Svensson, Valentine, Dongyi Lu, Jialong Jiang, Thomson, Matt, Pachter, Lior

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Defining the core Arabidopsis thaliana root microbiome von Lundberg, Derek S, Lebeis, Sarah L, Paredes, Sur Herrera, Yourstone, Scott, Gehring, Jase, Malfatti, Stephanie, Tremblay, Julien, Engelbrektson, Anna, Kunin, Victor, Rio, Tijana Glavinadel, Edgar, Robert C, Eickhorst, Thilo, Ley, Ruth E, Hugenholtz, Philip, Tringe, Susannah Green, Dang, Jeffery L

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Defining the core Arabidopsis thaliana root microbiome von Lundberg, Derek S, Lebeis, Sarah L, Paredes, Sur Herrera, Yourstone, Scott, Gehring, Jase, Malfatti, Stephanie, Tremblay, Julien, Engelbrektson, Anna, Kunin, Victor, del Rio, Tijana Glavina, Edgar, Robert C, Eickhorst, Thilo, Ley, Ruth E, Hugenholtz, Philip, Tringe, Susannah Green, Dang, Jeffery L

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cDNA Fastqs for Multiplexed Clytia Stimulation Experiment R2_04 von Tara Chari, Jase Gehring

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