CiiiDER: A tool for predicting and analysing transcription factor binding sites von Gearing, Linden J, Cumming, Helen E, Chapman, Ross, Finkel, Alexander M, Woodhouse, Isaac B, Luu, Kevin, Gould, Jodee A, Forster, Samuel C, Hertzog, Paul J

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RNA-Seq analysis of chikungunya virus infection and identification of granzyme A as a major promoter of arthritic inflammation von Wilson, Jane A C, Prow, Natalie A, Schroder, Wayne A, Ellis, Jonathan J, Cumming, Helen E, Gearing, Linden J, Poo, Yee Suan, Taylor, Adam, Hertzog, Paul J, Di Giallonardo, Francesca, Hueston, Linda, Le Grand, Roger, Tang, Bing, Le, Thuy T, Gardner, Joy, Mahalingam, Suresh, Roques, Pierre, Bird, Phillip I, Suhrbier, Andreas

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Mammalian cells internalize bacteriophages and use them as a resource to enhance cellular growth and survival von Bichet, Marion C, Adderley, Jack, Avellaneda-Franco, Laura, Magnin-Bougma, Isabelle, Torriero-Smith, Natasha, Gearing, Linden J, Deffrasnes, Celine, David, Cassandra, Pepin, Genevieve, Gantier, Michael P, Lin, Ruby CY, Patwa, Ruzeen, Moseley, Gregory W, Doerig, Christian, Barr, Jeremy J

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Mitochondrial arginase-2 is essential for IL-10 metabolic reprogramming of inflammatory macrophages von Dowling, Jennifer K., Afzal, Remsha, Gearing, Linden J., Cervantes-Silva, Mariana P., Annett, Stephanie, Davis, Gavin M., De Santi, Chiara, Assmann, Nadine, Dettmer, Katja, Gough, Daniel J., Bantug, Glenn R., Hamid, Fidinny I., Nally, Frances K., Duffy, Conor P., Gorman, Aoife L., Liddicoat, Alex M., Lavelle, Ed C., Hess, Christoph, Oefner, Peter J., Finlay, David K., Davey, Gavin P., Robson, Tracy, Curtis, Annie M., Hertzog, Paul J., Williams, Bryan R. G., McCoy, Claire E.

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Constitutive expression and distinct properties of IFN-epsilon protect the female reproductive tract from Zika virus infection von Coldbeck-Shackley, Rosa C, Romeo, Ornella, Rosli, Sarah, Gearing, Linden J, Gould, Jodee A, Lim, San S, Van der Hoek, Kylie H, Eyre, Nicholas S, Shue, Byron, Robertson, Sarah A, Best, Sonja M, Tate, Michelle D, Hertzog, Paul J, Beard, Michael R

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Prostate cancer cell‐intrinsic interferon signaling regulates dormancy and metastatic outgrowth in bone von Owen, Katie L, Gearing, Linden J, Zanker, Damien J, Brockwell, Natasha K, Khoo, Weng Hua, Roden, Daniel L, Cmero, Marek, Mangiola, Stefano, Hong, Matthew K, Spurling, Alex J, McDonald, Michelle, Chan, Chia‐Ling, Pasam, Anupama, Lyons, Ruth J, Duivenvoorden, Hendrika M, Ryan, Andrew, Butler, Lisa M, Mariadason, John M, Giang Phan, Tri, Hayes, Vanessa M, Sandhu, Shahneen, Swarbrick, Alexander, Corcoran, Niall M, Hertzog, Paul J, Croucher, Peter I, Hovens, Chris, Parker, Belinda S

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Interferon-ε is a tumour suppressor and restricts ovarian cancer von Marks, Zoe R. C., Campbell, Nicole K., Mangan, Niamh E., Vandenberg, Cassandra J., Gearing, Linden J., Matthews, Antony Y., Gould, Jodee A., Tate, Michelle D., Wray-McCann, Georgie, Ying, Le, Rosli, Sarah, Brockwell, Natasha, Parker, Belinda S., Lim, San S., Bilandzic, Maree, Christie, Elizabeth L., Stephens, Andrew N., de Geus, Eveline, Wakefield, Matthew J., Ho, Gwo-Yaw, McNally, Orla, McNeish, Iain A., Bowtell, David D. L., de Weerd, Nicole A., Scott, Clare L., Bourke, Nollaig M., Hertzog, Paul J.

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CD4+ T cell calibration of antigen-presenting cells optimizes antiviral CD8+ T cell immunity von Gressier, Elise, Schulte-Schrepping, Jonas, Petrov, Lev, Brumhard, Sophia, Stubbemann, Paula, Hiller, Anna, Obermayer, Benedikt, Spitzer, Jasper, Kostevc, Tomislav, Whitney, Paul G., Bachem, Annabell, Odainic, Alexandru, van de Sandt, Carolien, Nguyen, Thi H. O., Ashhurst, Thomas, Wilson, Kayla, Oates, Clare V. L., Gearing, Linden. J., Meischel, Tina, Hochheiser, Katharina, Greyer, Marie, Clarke, Michele, Kreutzenbeck, Maike, Gabriel, Sarah S., Kastenmüller, Wolfgang, Kurts, Christian, Londrigan, Sarah L., Kallies, Axel, Kedzierska, Katherine, Hertzog, Paul J., Latz, Eicke, Chen, Yu-Chen E., Radford, Kristen J., Chopin, Michael, Schroeder, Jan, Kurth, Florian, Gebhardt, Thomas, Sander, Leif E., Sawitzki, Birgit, Schultze, Joachim L., Schmidt, Susanne V., Bedoui, Sammy

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Type 1 interferon suppresses expression and glucocorticoid induction of glucocorticoid-induced leucine zipper (GILZ) von Dankers, Wendy, Northcott, Melissa, Bennett, Taylah, D'Cruz, Akshay, Sherlock, Rochelle, Gearing, Linden J, Hertzog, Paul, Russ, Brendan, Miceli, Iolanda, Scheer, Sebastian, Fujishiro, Maki, Hayakawa, Kunihiro, Ikeda, Keigo, Morand, Eric F, Jones, Sarah A

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Interferon epsilon is produced in the testis and protects the male reproductive tract against virus infection, inflammation and damage von Wijayarathna, Rukmali, de Geus, Eveline D, Genovese, Rosemary, Gearing, Linden J, Wray-McCann, Georgie, Sreenivasan, Rajini, Hasan, Hiba, Fijak, Monika, Stanton, Peter, Fietz, Daniela, Pilatz, Adrian, Schuppe, Hans-Christian, Tate, Michelle D, Hertzog, Paul J, Hedger, Mark P

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Inflammasome‐induced extracellular vesicles harbour distinct RNA signatures and alter bystander macrophage responses von Budden, Christina F., Gearing, Linden J., Kaiser, Romina, Standke, Lena, Hertzog, Paul J., Latz, Eicke

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HBO1 is required for the maintenance of leukaemia stem cells von MacPherson, Laura, Anokye, Juliana, Yeung, Miriam M., Lam, Enid Y. N., Chan, Yih-Chih, Weng, Chen-Fang, Yeh, Paul, Knezevic, Kathy, Butler, Miriam S., Hoegl, Annabelle, Chan, Kah-Lok, Burr, Marian L., Gearing, Linden J., Willson, Tracy, Liu, Joy, Choi, Jarny, Yang, Yuqing, Bilardi, Rebecca A., Falk, Hendrik, Nguyen, Nghi, Stupple, Paul A., Peat, Thomas S., Zhang, Ming, de Silva, Melanie, Carrasco-Pozo, Catalina, Avery, Vicky M., Khoo, Poh Sim, Dolezal, Olan, Dennis, Matthew L., Nuttall, Stewart, Surjadi, Regina, Newman, Janet, Ren, Bin, Leaver, David J., Sun, Yuxin, Baell, Jonathan B., Dovey, Oliver, Vassiliou, George S., Grebien, Florian, Dawson, Sarah-Jane, Street, Ian P., Monahan, Brendon J., Burns, Christopher J., Choudhary, Chunaram, Blewitt, Marnie E., Voss, Anne K., Thomas, Tim, Dawson, Mark A.

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STAT3-mediated upregulation of the AIM2 DNA sensor links innate immunity with cell migration to promote epithelial tumourigenesis von Dawson, Ruby E, Deswaerte, Virginie, West, Alison C, Tang, Ke, West, Alice J, Balic, Jesse J, Gearing, Linden J, Saad, Mohamed I, Yu, Liang, Wu, Yonghui, Bhathal, Prithi S, Kumar, Beena, Chakrabarti, Jayati T, Zavros, Yana, Oshima, Hiroko, Klinman, Dennis M, Oshima, Masanobu, Tan, Patrick, Jenkins, Brendan J

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Increased SARS-CoV-2 Infection, Protease, and Inflammatory Responses in Chronic Obstructive Pulmonary Disease Primary Bronchial Epithelial Cells Defined with Single-Cell RNA Sequen... von Johansen, Matt D, Mahbub, Rashad M, Idrees, Sobia, Nguyen, Duc H, Miemczyk, Stefan, Pathinayake, Prabuddha, Nichol, Kristy, Hansbro, Nicole G, Gearing, Linden J, Hertzog, Paul J, Gallego-Ortega, David, Britton, Warwick J, Saunders, Bernadette M, Wark, Peter A, Faiz, Alen, Hansbro, Philip M

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Cytosolic DNA sensor AIM2 promotes KRAS‐driven lung cancer independent of inflammasomes von Alanazi, Mohammad, Weng, Teresa, McLeod, Louise, Gearing, Linden J., Smith, Julian A., Kumar, Beena, Saad, Mohamed I., Jenkins, Brendan J.

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Blockade of the protease ADAM17 ameliorates experimental pancreatitis von Saad, Mohamed I, Weng, Teresa, Lundy, Joanne, Gearing, Linden J, West, Alison C, Harpur, Christopher M, Alanazi, Mohammad, Hodges, Christopher, Croagh, Daniel, Kumar, Beena, Sagi, Irit, Rose-John, Stefan, Jenkins, Brendan J

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Pharmacological inhibition of TBK1/IKKε blunts immunopathology in a murine model of SARS-CoV-2 infection von Ullah, Tomalika R., Johansen, Matt D., Balka, Katherine R., Ambrose, Rebecca L., Gearing, Linden J., Roest, James, Vivian, Julian P., Sapkota, Sunil, Jayasekara, W. Samantha N., Wenholz, Daniel S., Aldilla, Vina R., Zeng, Jun, Miemczyk, Stefan, Nguyen, Duc H., Hansbro, Nicole G., Venkatraman, Rajan, Kang, Jung Hee, Pang, Ee Shan, Thomas, Belinda J., Alharbi, Arwaf S., Rezwan, Refaya, O’Keeffe, Meredith, Donald, William A., Ellyard, Julia I., Wong, Wilson, Kumar, Naresh, Kile, Benjamin T., Vinuesa, Carola G., Kelly, Graham E., Laczka, Olivier F., Hansbro, Philip M., De Nardo, Dominic, Gantier, Michael P.

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Immunosuppressant exposure confounds gene expression analysis in systemic lupus erythematosus von Northcott, Melissa, Gearing, Linden J, Bonin, Julie, Koelmeyer, Rachel, Hoi, Alberta, Hertzog, Paul J, Morand, Eric F

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Regulation of H3K4me3 at Transcriptional Enhancers Characterizes Acquisition of Virus-Specific CD8+ T Cell-Lineage-Specific Function von Russ, Brendan E., Olshansky, Moshe, Li, Jasmine, Nguyen, Michelle L.T., Gearing, Linden J., Nguyen, Thi H.O., Olson, Matthew R., McQuilton, Hayley A., Nüssing, Simone, Khoury, Georges, Purcell, Damian F.J., Hertzog, Paul J., Rao, Sudha, Turner, Stephen J.

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BAF complex-mediated chromatin relaxation is required for establishment of X chromosome inactivation von Keniry, Andrew, Jansz, Natasha, Gearing, Linden J., Wanigasuriya, Iromi, Chen, Joseph, Nefzger, Christian M., Hickey, Peter F., Gouil, Quentin, Liu, Joy, Breslin, Kelsey A., Iminitoff, Megan, Beck, Tamara, Tapia del Fierro, Andres, Whitehead, Lachlan, Jarratt, Andrew, Kinkel, Sarah A., Taberlay, Phillippa C., Willson, Tracy, Pakusch, Miha, Ritchie, Matthew E., Hilton, Douglas J., Polo, Jose M., Blewitt, Marnie E.

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