Malaria surveillance reveals parasite relatedness, signatures of selection, and correlates of transmission across Senegal von Schaffner, Stephen F., Badiane, Aida, Khorgade, Akanksha, Ndiop, Medoune, Gomis, Jules, Wong, Wesley, Ndiaye, Yaye Die, Diedhiou, Younouss, Thwing, Julie, Seck, Mame Cheikh, Early, Angela, Sy, Mouhamad, Deme, Awa, Diallo, Mamadou Alpha, Sy, Ngayo, Sene, Aita, Ndiaye, Tolla, Sow, Djiby, Dieye, Baba, Ndiaye, Ibrahima Mbaye, Gaye, Amy, Ndiaye, Aliou, Battle, Katherine E., Proctor, Joshua L., Bever, Caitlin, Fall, Fatou Ba, Diallo, Ibrahima, Gaye, Seynabou, Sene, Doudou, Hartl, Daniel L., Wirth, Dyann F., MacInnis, Bronwyn, Ndiaye, Daouda, Volkman, Sarah K.

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Evidence of Plasmodium vivax circulation in western and eastern regions of Senegal: implications for malaria control von Badiane, Aida S, Ngom, Bassirou, Ndiaye, Tolla, Cunningham, Deirdre, Campbell, James, Gaye, Amy, Sène, Aita, Sy, Mouhamad, Ndiaye, Daouda, Nwakanma, Davis, Langhorne, Jean

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Genetic polymorphism of Merozoite Surface Protein 1 (msp1) and 2 (msp2) genes and multiplicity of Plasmodium falciparum infection across various endemic areas in Senegal von Ndiaye, Tolla, Sy, Mouhamad, Gaye, Amy, Ndiaye, Daouda

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Investigating the etiologies of non-malarial febrile illness in Senegal using metagenomic sequencing von Levine, Zoë C., Sene, Aita, Mkandawire, Winnie, Deme, Awa B., Ndiaye, Tolla, Sy, Mouhamad, Gaye, Amy, Diedhiou, Younouss, Mbaye, Amadou M., Ndiaye, Ibrahima M., Gomis, Jules, Ndiop, Médoune, Sene, Doudou, Faye Paye, Marietou, MacInnis, Bronwyn L., Schaffner, Stephen F., Park, Daniel J., Badiane, Aida S., Colubri, Andres, Ndiaye, Mouhamadou, Sy, Ngayo, Sabeti, Pardis C., Ndiaye, Daouda, Siddle, Katherine J.

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Genomic investigation of a dengue virus outbreak in Thiès, Senegal, in 2018 von Gaye, Amy, Ndiaye, Tolla, Sy, Mouhamad, Deme, Awa B., Thiaw, Alphonse B., Sene, Aita, Ndiaye, Cheikh, Diedhiou, Younouss, Mbaye, Amadou M., Ndiaye, Ibrahima, Tomkins-Tinch, Christopher, Gomis, Jules F., Badiane, Aida S., MacInnis, Bronwyn, Park, Daniel J., Ndiaye, Mouhamadou, Sy, Ngayo, Sabeti, Pardis C., Siddle, Katherine J., Ndiaye, Daouda

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Two decades of molecular surveillance in Senegal reveal rapid changes in known drug resistance mutations over time von Ndiaye, Yaye D, Wong, Wesley, Thwing, Julie, Schaffner, Stephen F, Brenneman, Katelyn Vendrely, Tine, Abdoulaye, Diallo, Mamadou A, Deme, Awa B, Sy, Mouhamad, Bei, Amy K, Thiaw, Alphonse B, Daniels, Rachel, Ndiaye, Tolla, Gaye, Amy, Ndiaye, Ibrahima M, Toure, Mariama, Gadiaga, Nogaye, Sene, Aita, Sow, Djiby, Garba, Mamane N, Yade, Mamadou S, Dieye, Baba, Diongue, Khadim, Zoumarou, Daba, Ndiaye, Aliou, Gomis, Jules F, Fall, Fatou B, Ndiop, Medoune, Diallo, Ibrahima, Sene, Doudou, Macinnis, Bronwyn, Seck, Mame C, Ndiaye, Mouhamadou, Ngom, Bassirou, Diedhiou, Younouss, Mbaye, Amadou M, Ndiaye, Lamine, Sy, Ngayo, Badiane, Aida S, Hartl, Daniel L, Wirth, Dyann F, Volkman, Sarah K, Ndiaye, Daouda

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Ex vivo RSA and pfkelch13 targeted-amplicon deep sequencing reveal parasites susceptibility to artemisinin in Senegal, 2017 von Yade, Mamadou Samb, Dièye, Baba, Coppée, Romain, Mbaye, Aminata, Diallo, Mamadou Alpha, Diongue, Khadim, Bailly, Justine, Mama, Atikatou, Fall, Awa, Thiaw, Alphonse Birane, Ndiaye, Ibrahima Mbaye, Ndiaye, Tolla, Gaye, Amy, Tine, Abdoulaye, Diédhiou, Younouss, Mbaye, Amadou Mactar, Doderer-Lang, Cécile, Garba, Mamane Nassirou, Bei, Amy Kristine, Ménard, Didier, Ndiaye, Daouda

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Amplicon deep sequencing of kelch13 in Plasmodium falciparum isolates from Senegal von Gaye, Amy, Sy, Mouhamad, Ndiaye, Tolla, Siddle, Katherine J, Park, Daniel J, Deme, Awa B, Mbaye, Aminata, Dieye, Baba, Ndiaye, Yaye Die, Neafsey, Daniel E, Early, Angela, Farrell, Timothy, Yade, Mamadou Samb, Diallo, Mamadou Alpha, Diongue, Khadim, Bei, Amy, Ndiaye, Ibrahima Mbaye, Volkman, Sarah K, Badiane, Aida Sadikh, Ndiaye, Daouda

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Evaluation of CareStart™ Malaria HRP2/pLDH (Pf/pan) Combo Test in a malaria low transmission region of Senegal von Diallo, Mamadou Alpha, Diongue, Khadim, Ndiaye, Mouhamadou, Gaye, Amy, Deme, Awa, Badiane, Aida S, Ndiaye, Daouda

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Molecular epidemiology of Plasmodium falciparum by multiplexed amplicon deep sequencing in Senegal von Ndiaye, Tolla, Sy, Mouhamad, Gaye, Amy, Siddle, Katherine J, Park, Daniel J, Bei, Amy K, Deme, Awa B, Mbaye, Aminata, Dieye, Baba, Ndiaye, Yaye Die, Ndiaye, Ibrahima Mbaye, Diallo, Mamadou Alpha, Diongue, Khadim, Volkman, Sarah K, Badiane, Aida Sadikh, Ndiaye, Daouda

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Selection of N86F184D1246 haplotype of Pfmrd1 gene by artemether-lumefantrine drug pressure on Plasmodium falciparum populations in Senegal von Mbaye, Aminata, Dieye, Baba, Ndiaye, Yaye D, Bei, Amy K, Muna, Affara, Deme, Awa B, Yade, Mamadou S, Diongue, Khadim, Gaye, Amy, Ndiaye, Ibrahima M, Ndiaye, Tolla, Sy, Mouhamad, Diallo, Mamadou A, Badiane, Aida S, Ndiaye, Mouhamadou, Seck, Mame C, Sy, Ngayo, Koita, Ousmane, Krogstad, Donald J, Nwakanma, Davis, Ndiaye, Daouda

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Quality assessment of malaria microscopic diagnosis at the Aristide Le Dantec University Hospital of Dakar, Senegal, in 2020 von Garba, Mamane N, Dème, Awa B, Diongue, Khadim, Diédhiou, Younousse, Mbaye, Amadou M, Dia, NDèye M, Seck, N'Dèye A, Zoumarou, Daba, Ndiaye, Lamine, Yade, Mamadou S, Dièye, Baba, Sène, Aita, Tine, Abdoulaye, Touré, Mariama, Gadiaga, Nogaye, Fall, Awa, Ngom, Bassirou, Sow, Djiby, Ndiaye, Aliou, Keita, Astou, Ndiaye, Mame F, Gomis, Jules F, Diop, Nana F, Diallo, Guète, Ndiaye, Ibrahima M, Ba, Elhadj M, Bitèye, Omar, Ndiaye, Cheikh, Mbodji, Fama S D, Ndiaye, Pape O, Ndiaye, Tolla, Gaye, Amy, Sy, Mouhamad, Ndiaye, Yaye D, Seck, Mame C, Ndiaye, Mouhamadou, Badiane, Aida S, Diallo, Mamadou A, Ndiaye, Daouda

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Genomic investigation of atypical malaria cases in Kanel, northern Senegal von Sy, Mouhamad, Badiane, Aida Sadikh, Deme, Awa Bineta, Gaye, Amy, Ndiaye, Tolla, Fall, Fatou Ba, Siddle, Katherine J, Dieye, Baba, Ndiaye, Yaye Die, Diallo, Mamadou Alpha, Diongue, Khadim, Seck, Mame Cheikh, Ndiaye, Ibrahima Mbaye, Cissé, Moustapha, Gueye, Alioune Badara, Sène, Doudou, Dieye, Yakou, Souané, Tamba, MacInnis, Bronwyn, Volkman, Sarah K, Wirth, Dyann F, Ndiaye, Daouda

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Ex vivo susceptibility and genotyping of Plasmodium falciparum isolates from Pikine, Senegal von Mbaye, Aminata, Gaye, Amy, Dieye, Baba, Ndiaye, Yaye D, Bei, Amy K, Affara, Muna, Deme, Awa B, Yade, Mamadou S, Diongue, Khadim, Ndiaye, Ibrahima M, Ndiaye, Tolla, Sy, Mouhamed, Sy, Ngayo, Koita, Ousmane, Krogstad, Donald J, Volkman, Sarah, Nwakanma, Davis, Ndiaye, Daouda

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High resolution melting: a useful field-deployable method to measure dhfr and dhps drug resistance in both highly and lowly endemic Plasmodium populations von Ndiaye, Yaye Dié, Diédhiou, Cyrille K, Bei, Amy K, Dieye, Baba, Mbaye, Aminata, Mze, Nasserdine Papa, Daniels, Rachel F, Ndiaye, Ibrahima M, Déme, Awa B, Gaye, Amy, Sy, Mouhamad, Ndiaye, Tolla, Badiane, Aida S, Ndiaye, Mouhamadou, Premji, Zul, Wirth, Dyann F, Mboup, Souleymane, Krogstad, Donald, Volkman, Sarah K, Ahouidi, Ambroise D, Ndiaye, Daouda

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Genomic Analysis of Lassa Virus during an Increase in Cases in Nigeria in 2018 von Siddle, Katherine J, Eromon, Philomena, Barnes, Kayla G, Mehta, Samar, Oguzie, Judith U, Odia, Ikponmwosa, Schaffner, Stephen F, Winnicki, Sarah M, Shah, Rickey R, Qu, James, Wohl, Shirlee, Brehio, Patrick, Iruolagbe, Christopher, Aiyepada, John, Uyigue, Eghosa, Akhilomen, Patience, Okonofua, Grace, Ye, Simon, Kayode, Tolulope, Ajogbasile, Fehintola, Uwanibe, Jessica, Gaye, Amy, Momoh, Mambu, Chak, Bridget, Kotliar, Dylan, Carter, Amber, Gladden-Young, Adrianne, Freije, Catherine A, Omoregie, Omigie, Osiemi, Blessing, Muoebonam, Ekene B, Airende, Michael, Enigbe, Rachael, Ebo, Benevolence, Nosamiefan, Iguosadolo, Oluniyi, Paul, Nekoui, Mahan, Ogbaini-Emovon, Ephraim, Garry, Robert F, Andersen, Kristian G, Park, Daniel J, Yozwiak, Nathan L, Akpede, George, Ihekweazu, Chikwe, Tomori, Oyewale, Okogbenin, Sylvanus, Folarin, Onikepe A, Okokhere, Peter O, MacInnis, Bronwyn L, Sabeti, Pardis C, Happi, Christian T

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Non-falciparum malaria in Dakar: a confirmed case of Plasmodium ovale wallikeri infection von Diallo, Mamadou A, Badiane, Aida S, Diongue, Khadim, Deme, Awa, Lucchi, Naomi W, Gaye, Marie, Ndiaye, Tolla, Ndiaye, Mouhamadou, Sene, Louise K, Diop, Abdoulaye, Gaye, Amy, Ndiaye, Yaye D, Samb, Diama, Yade, Mamadou S, Ndir, Omar, Udhayakumar, Venkatachalam, Ndiaye, Daouda

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KRAS and BRAF Mutations in Patients with Hepatocellular Carcinoma in Senegal von Souleymane, Thiam, Fatou Kine Sy Thorpe, Dia, Damigou Mawuli, Sambiani, Papa Saloum, Diop, Ibrahima, Ka, Gabriel Nougnignon Comlan, Deguenonvo, Yaye Dié, Ndiaye, Fatou, Cisse, Arame, Ndiaye, Abdourahmane, Samba, Najah Fatou, Coly, Idrissa Yaya, Soumah, Fatou, Diedhiou, Hortence Honorine Médécé, Agossou, Amy, Gaye, Tolla, Ndiaye, Cherif Mouhame, Dial, Daouda, Ndiaye, Fatou, Diallo

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Selection of N86F184D1246 haplotype of Pfmrd1 gene by artemether–lumefantrine drug pressure on Plasmodium falciparum populations in Senegal von Mbaye, Aminata, Dieye, Baba, Ndiaye, Yaye D, Bei, Amy K, Muna, Affara, Deme, Awa B, Yade, Mamadou S, Diongue, Khadim, Gaye, Amy, Ndiaye, Ibrahima M, Ndiaye, Tolla, Sy, Mouhamad, Diallo, Mamadou A, Badiane, Aida S, Ndiaye, Mouhamadou, Seck, Mame C, Sy, Ngayo, Koita, Ousmane, Krogstad, Donald J, Nwakanma, Davis, Ndiaye, Daouda

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Ex vivo RSA and pfkelch13 targeted-amplicon deep sequencing reveal parasites susceptibility to artemisinin in Senegal, 2017 von Yade, Mamadou Samb, Dièye, Baba, Coppée, Romain, Mbaye, Aminata, Diallo, Mamadou Alpha, Diongue, Khadim, Bailly, Justine, Mama, Atikatou, Fall, Awa, Thiaw, Alphonse Birane, Ndiaye, Ibrahima Mbaye, Ndiaye, Tolla, Gaye, Amy, Tine, Abdoulaye, Diédhiou, Younouss, Mbaye, Amadou Mactar, Doderer-Lang, Cécile, Garba, Mamane Nassirou, Bei, Amy Kristine, Ménard, Didier, Ndiaye, Daouda

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