Diet Dominates Host Genotype in Shaping the Murine Gut Microbiota von Carmody, Rachel N., Gerber, Georg K., Luevano, Jesus M., Gatti, Daniel M., Somes, Lisa, Svenson, Karen L., Turnbaugh, Peter J.

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Defining the consequences of genetic variation on a proteome-wide scale von Chick, Joel M., Munger, Steven C., Simecek, Petr, Huttlin, Edward L., Choi, Kwangbom, Gatti, Daniel M., Raghupathy, Narayanan, Svenson, Karen L., Churchill, Gary A., Gygi, Steven P.

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High-resolution genetic mapping using the Mouse Diversity outbred population von Svenson, Karen L, Gatti, Daniel M, Valdar, William, Welsh, Catherine E, Cheng, Riyan, Chesler, Elissa J, Palmer, Abraham A, McMillan, Leonard, Churchill, Gary A

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Genetic properties of the MAGIC maize population: a new platform for high definition QTL mapping in Zea mays von Dell'Acqua, Matteo, Gatti, Daniel M, Pea, Giorgio, Cattonaro, Federica, Coppens, Frederik, Magris, Gabriele, Hlaing, Aye L, Aung, Htay H, Nelissen, Hilde, Baute, Joke, Frascaroli, Elisabetta, Churchill, Gary A, Inzé, Dirk, Morgante, Michele, Pè, Mario Enrico

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CloudNeo: a cloud pipeline for identifying patient-specific tumor neoantigens von Bais, Preeti, Namburi, Sandeep, Gatti, Daniel M, Zhang, Xinyu, Chuang, Jeffrey H

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Uncovering Modifier Genes of X-Linked Alport Syndrome Using a Novel Multiparent Mouse Model von Takemon, Yuka, Wright, Valerie, Davenport, Bernard, Gatti, Daniel M, Sheehan, Susan M, Letson, Kelsey, Savage, Holly S, Lennon, Rachel, Korstanje, Ron

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Multiple genetic loci influence vaccine-induced protection against Mycobacterium tuberculosis in genetically diverse mice von Kurtz, Sherry L, Baker, Richard E, Boehm, Frederick J, Lehman, Chelsea C, Mittereder, Lara R, Khan, Hamda, Rossi, Amy P, Gatti, Daniel M, Beamer, Gillian, Sassetti, Christopher M, Elkins, Karen L

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CXCL1: A new diagnostic biomarker for human tuberculosis discovered using Diversity Outbred mice von Koyuncu, Deniz, Niazi, Muhammad Khalid Khan, Tavolara, Thomas, Abeijon, Claudia, Ginese, Melanie L, Liao, Yanghui, Mark, Carolyn, Specht, Aubrey, Gower, Adam C, Restrepo, Blanca I, Gatti, Daniel M, Kramnik, Igor, Gurcan, Metin, Yener, Bülent, Beamer, Gillian

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Into the Wild: A novel wild-derived inbred strain resource expands the genomic and phenotypic diversity of laboratory mouse models von Dumont, Beth L, Gatti, Daniel M, Ballinger, Mallory A, Lin, Dana, Phifer-Rixey, Megan, Sheehan, Michael J, Suzuki, Taichi A, Wooldridge, Lydia K, Frempong, Hilda Opoku, Lawal, Raman Akinyanju, Churchill, Gary A, Lutz, Cathleen, Rosenthal, Nadia, White, Jacqueline K, Nachman, Michael W

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Systems genetics uncover new loci containing functional gene candidates in Mycobacterium tuberculosis-infected Diversity Outbred mice von Gatti, Daniel M, Tyler, Anna L, Mahoney, J Matthew, Churchill, Gary A, Yener, Bulent, Koyuncu, Deniz, Gurcan, Metin N, Niazi, Mk Khalid, Tavolara, Thomas, Gower, Adam, Dayao, Denise, McGlone, Emily, Ginese, Melanie L, Specht, Aubrey, Alsharaydeh, Anas, Tessier, Philipe A, Kurtz, Sherry L, Elkins, Karen L, Kramnik, Igor, Beamer, Gillian

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Nine quick tips for efficient bioinformatics curriculum development and training von McClatchy, Susan, Bass, Kristin M, Gatti, Daniel M, Moylan, Adam, Churchill, Gary

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Structural Variation Shapes the Landscape of Recombination in Mouse von Morgan, Andrew P, Gatti, Daniel M, Najarian, Maya L, Keane, Thomas M, Galante, Raymond J, Pack, Allan I, Mott, Richard, Churchill, Gary A, de Villena, Fernando Pardo-Manuel

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Quantitative trait loci mapping provides insights into the genetic regulation of dendritic cell numbers in mouse tissues von Oliveira, Thiago Y., Merkenschlager, Julia, Eisenreich, Thomas, Bortolatto, Juliana, Yao, Kai-Hui, Gatti, Daniel M., Churchill, Gary A., Nussenzweig, Michel C., Breton, Gaëlle

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Mouse genome-wide association and systems genetics identifies Lhfp as a regulator of bone mass von Mesner, Larry D, Calabrese, Gina M, Al-Barghouthi, Basel, Gatti, Daniel M, Sundberg, John P, Churchill, Gary A, Godfrey, Dana A, Ackert-Bicknell, Cheryl L, Farber, Charles R

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Quantitative Trait Locus Mapping Methods for Diversity Outbred Mice von Gatti, Daniel M, Svenson, Karen L, Shabalin, Andrey, Wu, Long-Yang, Valdar, William, Simecek, Petr, Goodwin, Neal, Cheng, Riyan, Pomp, Daniel, Palmer, Abraham, Chesler, Elissa J, Broman, Karl W, Churchill, Gary A

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Lung necrosis and neutrophils reflect common pathways of susceptibility to Mycobacterium tuberculosis in genetically diverse, immune-competent mice von Niazi, Muhammad K K, Dhulekar, Nimit, Schmidt, Diane, Major, Samuel, Cooper, Rachel, Abeijon, Claudia, Gatti, Daniel M, Kramnik, Igor, Yener, Bulent, Gurcan, Metin, Beamer, Gillian

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Doxorubicin-Induced Cardiotoxicity in Collaborative Cross (CC) Mice Recapitulates Individual Cardiotoxicity in Humans von Zeiss, Caroline J, Gatti, Daniel M, Toro-Salazar, Olga, Davis, Crystal, Lutz, Cathleen M, Spinale, Francis, Stearns, Timothy, Furtado, Milena B, Churchill, Gary A

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Sensitivity to hepatotoxicity due to epigallocatechin gallate is affected by genetic background in diversity outbred mice von Church, Rachel J, Gatti, Daniel M, Urban, Thomas J, Long, Nanye, Yang, Xi, Shi, Qiang, Eaddy, J Scott, Mosedale, Merrie, Ballard, Shawn, Churchill, Gary A, Navarro, Victor, Watkins, Paul B, Threadgill, David W, Harrill, Alison H

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Heading down the wrong pathway: on the influence of correlation within gene sets von Gatti, Daniel M, Barry, William T, Nobel, Andrew B, Rusyn, Ivan, Wright, Fred A

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R/qtl2: Software for Mapping Quantitative Trait Loci with High-Dimensional Data and Multiparent Populations von Broman, Karl W, Gatti, Daniel M, Simecek, Petr, Furlotte, Nicholas A, Prins, Pjotr, Sen, Śaunak, Yandell, Brian S, Churchill, Gary A

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