TCGAbiolinks: an R/Bioconductor package for integrative analysis of TCGA data von Colaprico, Antonio, Silva, Tiago C, Olsen, Catharina, Garofano, Luciano, Cava, Claudia, Garolini, Davide, Sabedot, Thais S, Malta, Tathiane M, Pagnotta, Stefano M, Castiglioni, Isabella, Ceccarelli, Michele, Bontempi, Gianluca, Noushmehr, Houtan

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Regulated interaction of ID2 with the anaphase-promoting complex links progression through mitosis with reactivation of cell-type-specific transcription von Lee, Sang Bae, Garofano, Luciano, Ko, Aram, D’Angelo, Fulvio, Frangaj, Brulinda, Sommer, Danika, Gan, Qiwen, Kim, KyeongJin, Cardozo, Timothy, Iavarone, Antonio, Lasorella, Anna

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A metabolic function of FGFR3-TACC3 gene fusions in cancer von Frattini, Véronique, Pagnotta, Stefano M., Tala, Fan, Jerry J., Russo, Marco V., Lee, Sang Bae, Garofano, Luciano, Zhang, Jing, Shi, Peiguo, Lewis, Genevieve, Sanson, Heloise, Frederick, Vanessa, Castano, Angelica M., Cerulo, Luigi, Rolland, Delphine C. M., Mall, Raghvendra, Mokhtari, Karima, Elenitoba-Johnson, Kojo S. J., Sanson, Marc, Huang, Xi, Ceccarelli, Michele, Lasorella, Anna, Iavarone, Antonio

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Knowing Is Better than Wondering: The Cataloging of Natural Heritage between Museum Studies and Crime von Franza, Annarita, Scali, Federica, Garofano, Luciano, Pratesi, Giovanni

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A map of tumor–host interactions in glioma at single-cell resolution von Caruso, Francesca Pia, Garofano, Luciano, D'Angelo, Fulvio, Yu, Kai, Tang, Fuchou, Yuan, Jinzhou, Zhang, Jing, Cerulo, Luigi, Pagnotta, Stefano M, Bedognetti, Davide, Sims, Peter A, Suvà, Mario, Su, Xiao-Dong, Lasorella, Anna, Iavarone, Antonio, Ceccarelli, Michele

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Glioblastoma hijacks neuronal mechanisms for brain invasion von Venkataramani, Varun, Yang, Yvonne, Schubert, Marc Cicero, Reyhan, Ekin, Tetzlaff, Svenja Kristin, Wißmann, Niklas, Botz, Michael, Soyka, Stella Judith, Beretta, Carlo Antonio, Pramatarov, Rangel Lyubomirov, Fankhauser, Laura, Garofano, Luciano, Freudenberg, Alexander, Wagner, Julia, Tanev, Dimitar Ivanov, Ratliff, Miriam, Xie, Ruifan, Kessler, Tobias, Hoffmann, Dirk C., Hai, Ling, Dörflinger, Yvette, Hoppe, Simone, Yabo, Yahaya A., Golebiewska, Anna, Niclou, Simone P., Sahm, Felix, Lasorella, Anna, Slowik, Martin, Döring, Leif, Iavarone, Antonio, Wick, Wolfgang, Kuner, Thomas, Winkler, Frank

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Molecular Profiling Reveals Biologically Discrete Subsets and Pathways of Progression in Diffuse Glioma von Ceccarelli, Michele, Salama, Sofie R., Manyam, Ganiraju, Zoppoli, Pietro, Grifford, Mia, Rao, Arvind, Lau, Ching C., Huse, Jason, Zheng, Siyuan, Hess, Kenneth, Rao, Ganesh, Beroukhim, Rameen, Akbani, Rehan, Wrensch, Margaret, Haussler, David, Aldape, Kenneth D., Anjum, Samreen, Balu, Saianand, Barnett, Gene, Black, Keith L., Bristow, Christopher A., Chen, Qing-Rong, Cho, Juok, Chuah, Eric, Chudamani, Sudha, Cohen, Mark L., Couce, Marta, Davidsen, Tanja, Davis, Amy, Elder, J. Bradley, Eschbacher, Jennifer M., Fehrenbach, Ashley, Ferguson, Martin, Fuller, Gregory, Fulop, Jordonna, Garofano, Luciano, Gastier-Foster, Julie M., Gehlenborg, Nils, Gerken, Mark, Gibson, William J., Hadjipanayis, Angela, Hayes, D. Neil, Hilty, Joe, Hoyle, Alan P., Jones, Corbin D., Jones, Steven J.M., Ju, Zhenlin, Kastl, Alison, Kendler, Ady, Kucherlapati, Raju, Lichtenberg, Tara M., Lin, Pei, Ljubimova, Julia Y., Lu, Yiling, Ma, Yussanne, Maglinte, Dennis T., Marra, Marco A., Meng, Shaowu, Miller, C. Ryan, Mills, Gordon B., Mose, Lisle E., Naska, Theresa, Noble, Michael S., Noss, Ardene, Palmer, Cheryl, Parfenov, Michael, Parker, Joel S., Perou, Charles M., Pihl, Todd, Protopopov, Alexei, Ramirez, Nilsa C., Saksena, Gordon, Schein, Jacqueline E., Shen, Hui, Shi, Yan, Shimmel, Kristen, Sicotte, Hugues, Sifri, Suzanne, Silva, Tiago, Singh, Rosy, Song, Xingzhi, Souza, Camila, Sun, Huandong, Sun, Charlie, Tang, Jiabin, Trevisan, Felipe Amstalden, Van Den Berg, David J., Voet, Doug, Wang, Zhining, Weinstein, John N., Weisenberger, Daniel J., Wilkerson, Matthew D., Williams, Felicia, Wise, Lisa, Xu, Andrew W., Yang, Lixing, Zack, Travis I., Zhang, Jianhua, Zhang, Wei, Zmuda, Erik

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Proteogenomic and metabolomic characterization of human glioblastoma von Gritsenko, Marina A., Kyle, Jennifer E., Cao, Song, Rykunov, Dmitry, Cornwell, MacIntosh, Petralia, Francesca, Wu, Yige, Reva, Boris, Kawaler, Emily, Olsen, Lindsey K., Liang, Wen-Wei, Wendl, Michael C., Caravan, Wagma, Ji, Jiayi, Petyuk, Vladislav A., Moon, Jamie, Moore, Ronald J., Krek, Azra, Zhu, Houxiang, McMichael, Joshua F., Lu, Shuangjia, Baral, Jessika, Yao, Lijun, Zink, Erika, Bloodsworth, Kent J., Satpathy, Shankha, Boca, Simina M., Chen, Feng, Ketchum, Karen A., Boja, Emily S., Hiltke, Tara, Mani, D.R., Chen, Xi S., Li, Qing Kay, Kim, Albert H., Fenyö, David, Mesri, Mehdi, Resnick, Adam C., Wang, Pei, Chheda, Milan G., Barnholtz-Sloan, Jill S., Rodland, Karin D., Liu, Tao, Ding, Li, Bauer, Thomas, Borucki, Melissa, Burke, Meghan C., Cai, Shuang, Calinawan, Anna P., Carr, Steven A., Chan, Daniel W., Charamut, Alyssa, Chesla, David, Chowdhury, Shrabanti, Cieślik, Marcin P., Culpepper, Houston, Demir, Emek, Dhir, Rajiv, Duffy, Elizabeth, Edwards, Robert, Gabriel, Stacey, Gabrovski, Nikolay, Garofano, Luciano, Gillette, Michael A., Hannick, Linda I., Hindenach, Barbara, Hoadley, Katherine A., Hostetter, Galen, Huang, Chen, Jaehnig, Eric, Ji, Nan, Jones, Corbin D., Kaspera, Wojciech, Lei, Jonathan, Li, Kai, Liu, Hongwei, Lubínski, Jan, Malc, Ewa, Malovannaya, Anna, McGarvey, Peter B., McGee, John, Mieczkowski, Piotr, Modugno, Francesmary, Ozbek, Umut, Paulovich, Amanda G., Piehowski, Paul D., Polonskaya, Larisa, Pruetz, Barbara, Ramkissoon, Shakti, Riggins, Gregory, Stawicki, Jakub, Tabor, Dave, Tansil, Darlene, Traer, Elie, Vatanian, Negin, Webster, Alex, Wen, Bo, Whiteaker, Jeffrey R., Zhang, Liwei, Zhao, Grace

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Glioma progression is shaped by genetic evolution and microenvironment interactions von Varn, Frederick S., Johnson, Kevin C., Martinek, Jan, Huse, Jason T., Wesseling, Pieter, Cooper, Lee A.D., Malta, Tathiane M., Wade, Taylor E., Brat, Daniel, Aldape, Kenneth, Ismail, Azzam, Kim, Hoon, White, Kieron, Pollock, Steven, Goldfarb, Christine, Lee, Ga-Hyun, Anderson, Kevin J., Nehar-Belaid, Djamel, Bakas, Spyridon, Byrne, Annette T., D’Angelo, Fulvio, Gan, Hui K., Khasraw, Mustafa, Migliozzi, Simona, Paek, Sun Ha, Walenkamp, Annemiek M.E., Weiss, Tobias, Poisson, Laila M., Noushmehr, Houtan, Iavarone, Antonio, Verhaak, Roel G.W., Varn, Frederick S., Huse, Jason T., Nasrallah, MacLean P., Wesseling, Pieter, Cooper, Lee A.D., Malta, Tathiane M., Sabedot, Thais S., Brat, Daniel, Gould, Peter V., Aldape, Kenneth, Sivajothi, Santhosh K., Barthel, Floris P., Kocakavuk, Emre, Ahmed, Nazia, White, Kieron, Moon, Hyo-Eun, Pollock, Steven, Lee, Ga-Hyun, Garofano, Luciano, Anderson, Kevin J., Nehar-Belaid, Djamel, Barnholtz-Sloan, Jill S., Bakas, Spyridon, Byrne, Annette T., Gan, Hui K., Khasraw, Mustafa, Ryan Ormond, D., Ha Paek, Sun, Van Meir, Erwin G., Walenkamp, Annemiek M.E., Watts, Colin, Weiss, Tobias, Weller, Michael, Amin, Samirkumar B., Brodbelt, Andrew, Bulsara, Ketan R., Castro, Ana Valeria, Connelly, Jennifer M., Costello, Joseph F., Finocchiaro, Gaetano, French, Pim J., Hau, Ann C., Hong, Chibo, Horbinski, Craig, Kannan, Kasthuri S., Kouwenhoven, Mathilde CM, LaViolette, Peter S., Ligon, Keith L., Lowman, Allison K., Miletic, Hrvoje, Niers, Johanna M., Phillips, Joanna J., Rabadan, Raul, Rao, Ganesh, Reifenberger, Guido, Sanai, Nader, Short, Susan C., Suzuki, Hiromichi, Tabatabai, Ghazaleh, Tomaszewski, William H., Wells, Michael, Wheeler, Helen, Xie, Jichun, Alfred Yung, W.K., Zadeh, Gelareh, Poisson, Laila M., Noushmehr, Houtan, Iavarone, Antonio, Verhaak, Roel GW

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Proteogenomic insights into the biology and treatment of HPV-negative head and neck squamous cell carcinoma von Savage, Sara R., Eguez, Rodrigo Vargas, Li, Yize, Jaehnig, Eric J., Cieślik, Marcin, Chang, Hui-Yin, Li, Kai, Li, Qing Kay, Clark, David J., Hu, Yingwei, Cao, Liwei, Wang, Yuefan, Cho, Kyung-Cho, Liao, Yuxing, Anurag, Meenakshi, Ji, Jiayi, Zhou, Daniel Cui, Carr, Steven A., Zhang, Zhen, Chen, Xi S., Pico, Alexander R., Kinsinger, Christopher R., Robles, Ana I., An, Eunkyung, Hiltke, Tara, Mesri, Mehdi, Weaver, Alissa M., Sikora, Andrew G., Wierzbicka, Małgorzata, Wiznerowicz, Maciej, Satpathy, Shankha, Gillette, Michael A., Miles, George, Ellis, Matthew J., Omenn, Gilbert S., Boja, Emily S., Dhanasekaran, Saravana M., Agarwal, Anupriya, Avanessian, Shayan C., Bathe, Oliver F., Birger, Chet, Birrer, Michael J., Bocik, William E., Borate, Uma, Borucki, Melissa, Cai, Shuang, Charamut, Alyssa, Chen, Lin S., Chowdhury, Shrabanti, Clauser, Karl R., Culpepper, Houston, Czernicki, Tomasz, D'Angelo, Fulvio, Domagalski, Marcin J., Dyer, Maureen, Edwards, Nathan J., Ermakova, Tatiana S., Francis, Alicia, Goldthwaite, Charles A., Hannick, Linda I., Hayes, David N., Heiman, David, Jewell, Scott D., Jones, Corbin D., Krek, Azra, Liu, Tao, Ma, Weiping, Malc, Ewa, Malovannaya, Anna, Mareedu, Sailaja, Marrero-Oliveras, Annette, McGee, John, Mieczkowski, Piotr, Newton, Chelsea J., Ozbek, Umut, Payne, Samuel H., Pazardzhikliev, Dimitar Dimitrov, Petralia, Francesca, Piehowski, Paul D., Polonskaya, Larisa, Ponomareva, Elena V., Qu, Ning, Ramkissoon, Shakti, Reva, Boris, Richey, Shannon, Robinson, Karna, Roche, Nancy, Rodland, Karin, Shi, Yan, Shutack, Yvonne, Sokoll, Lori J., Stein, Stephen E., Szopa, Wojciech, Tyner, Jeffrey, Vasilev, Lyubomir Valkov, Whiteaker, Jeffrey R., Wu, Yige, Yi, Xinpei, Zakhartsev, Yuriy, Zhao, Grace

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EPCO-35. IDENTIFICATION OF DIVERSE IMMUNE PHENOTYPES IN NF-1 GLIOMA BY SINGLE NUCLEI GENE EXPRESSION ANALYSIS von Garofano, Luciano, Oh, Young Taek, Najac, Ryan D, Ceccarelli, Michele, Sanson, Marc, Lasorella, Anna, Iavarone, Antonio

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EPCO-05. DIFFERENTIAL MOLECULAR PROFILING OF IDH WILD TYPE GLIOBLASTOMA SURVIVORS REVEALS THE ASSOCIATION OF NEOANTIGEN QUALITY WITH EXCEPTIONAL LONG SURVIVAL von D'Angelo, Fulvio, Garofano, Luciano, Aoki, Kosuke, Ceccarelli, Michele, Lasorella, Anna, Sanson, Marc, Iavarone, Antonio

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The molecular landscape of glioma in patients with Neurofibromatosis 1 von D’Angelo, Fulvio, Ceccarelli, Michele, Tala, Garofano, Luciano, Zhang, Jing, Frattini, Véronique, Caruso, Francesca P., Lewis, Genevieve, Alfaro, Kristin D., Bauchet, Luc, Berzero, Giulia, Cachia, David, Cangiano, Mario, Capelle, Laurent, de Groot, John, DiMeco, Francesco, Ducray, François, Farah, Walid, Finocchiaro, Gaetano, Goutagny, Stéphane, Kamiya-Matsuoka, Carlos, Lavarino, Cinzia, Loiseau, Hugues, Lorgis, Véronique, Marras, Carlo E., McCutcheon, Ian, Nam, Do-Hyun, Ronchi, Susanna, Saletti, Veronica, Seizeur, Romuald, Slopis, John, Suñol, Mariona, Vandenbos, Fanny, Varlet, Pascale, Vidaud, Dominique, Watts, Colin, Tabar, Viviane, Reuss, David E., Kim, Seung-Ki, Meyronet, David, Mokhtari, Karima, Salvador, Hector, Bhat, Krishna P., Eoli, Marica, Sanson, Marc, Lasorella, Anna, Iavarone, Antonio

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Treatment of metabolic acidosis with sodium bicarbonate delays progression of chronic kidney disease: the UBI Study von Di Iorio, Biagio R., Bellasi, Antonio, Raphael, Kalani L., Santoro, Domenico, Aucella, Filippo, Garofano, Luciano, Ceccarelli, Michele, Di Lullo, Luca, Capolongo, Giovanna, Di Iorio, Mattia, Guastaferro, Pasquale, Capasso, Giovambattista

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RGBM: regularized gradient boosting machines for identification of the transcriptional regulators of discrete glioma subtypes von Mall, Raghvendra, Cerulo, Luigi, Garofano, Luciano, Frattini, Veronique, Kunji, Khalid, Bensmail, Halima, Sabedot, Thais S, Noushmehr, Houtan, Lasorella, Anna, Iavarone, Antonio, Ceccarelli, Michele

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EPCO-27. REVEALING TUMOR HETEROGENEITY AND IMMUNE MICROENVIRONMENT IN NF-1 GLIOMA BY SINGLE-CELL GENE EXPRESSION PROFILING von D'Angelo, Fulvio, Garofano, Luciano, Oh, Young Taek, Najac, Ryan, Ceccarelli, Michele, Eoli, Marica, Sanson, Marc, Lasorella, Anna, Iavarone, Antonio

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Pathway-based classification of glioblastoma uncovers a mitochondrial subtype with therapeutic vulnerabilities von Garofano, Luciano, Migliozzi, Simona, Oh, Young Taek, D'Angelo, Fulvio, Najac, Ryan D., Ko, Aram, Frangaj, Brulinda, Caruso, Francesca Pia, Yu, Kai, Yuan, Jinzhou, Zhao, Wenting, Luisa Di Stefano, Anna, Bielle, Franck, Jiang, Tao, Sims, Peter, Suva, Mario L., Tang, Fuchou, Su, Xiao-Dong, Ceccarelli, Michele, Sanson, Marc, Lasorella, Anna, Iavarone, Antonio

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EPCO-03. PATHWAY-BASED STRATIFICATION OF GLIOBLASTOMA BY MULTI-OMICS INFORMS SUBTYPE-SPECIFIC MASTER KINASES-PHOSPHOSITE SUBSTRATES von Migliozzi, Simona, Oh, Young Taek, Hasanain, Mohammad, Garofano, Luciano, D'Angelo, Fulvio, Picca, Alberto, Bielle, Franck, Sarkaria, Jann, Ceccarelli, Michele, Sanson, Marc, Lasorella, Anna, Iavarone, Antonio

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EXTH-21. DEVELOPMENT OF THERAPEUTIC STRATEGIES BY PATHWAY-BASED MULTI-OMICS APPROACH AND MASTER KINASE ANALYSIS IN GLIOBLASTOMA MULTIFORME von Oh, Michael, Hasanain, Mohammad, Migliozzi, Simona, Garofano, Luciano, D'Angelo, Fulvio, Stefano, Anna Luisa Di, Lerond, Julie, Sarkaria, Jann, Ceccarelli, Michele, Sanson, Marc, Lasorella, Anna, Iavarone, Antonio

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EPCO-27. RECONSTRUCTION OF THE SPATIAL ECOSYSTEM OF GLIOBLASTOMA REVEALS RECURRENT RELATIONSHIPS BETWEEN TUMOR CELL STATES AND TUMOR MICROENVIRONMENT von Adabbo, Bruno, Migliozzi, Simona, Garofano, Luciano, Oh, Young Taek, Gultekin, Sakir H, D'Angelo, Fulvio, Roberts, Evan R, Bilbao, Daniel C, Davila, Pedro M, Williams, Sion L, Currall, Benjamin B, Ceccarelli, Michele, Lasorella, Anna, Iavarone, Antonio

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