Pathogen metadata platform: software for accessing and analyzing pathogen strain information von Chang, Wenling E, Peterson, Matthew W, Garay, Christopher D, Korves, Tonia

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Metabolic modeling predicts metabolite changes in Mycobacterium tuberculosis von Garay, Christopher D, Dreyfuss, Jonathan M, Galagan, James E

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Additional file 1: Figure S1. of Pathogen metadata platform: software for accessing and analyzing pathogen strain information von Wenling Chang, Peterson, Matthew, Garay, Christopher D., Korves, Tonia

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Comprehensive plasma proteomic profiling reveals biomarkers for active tuberculosis von Garay-Baquero, Diana J, White, Cory H, Walker, Naomi F, Tebruegge, Marc, Schiff, Hannah F, Ugarte-Gil, Cesar, Morris-Jones, Stephen, Marshall, Ben G, Manousopoulou, Antigoni, Adamson, John, Vallejo, Andres F, Bielecka, Magdalena K, Wilkinson, Robert J, Tezera, Liku B, Woelk, Christopher H, Garbis, Spiros D, Elkington, Paul

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The Mycobacterium tuberculosis regulatory network and hypoxia von Galagan, James E., Minch, Kyle, Peterson, Matthew, Lyubetskaya, Anna, Azizi, Elham, Sweet, Linsday, Gomes, Antonio, Rustad, Tige, Dolganov, Gregory, Glotova, Irina, Abeel, Thomas, Mahwinney, Chris, Kennedy, Adam D., Allard, René, Brabant, William, Krueger, Andrew, Jaini, Suma, Honda, Brent, Yu, Wen-Han, Hickey, Mark J., Zucker, Jeremy, Garay, Christopher, Weiner, Brian, Sisk, Peter, Stolte, Christian, Winkler, Jessica K., Van de Peer, Yves, Iazzetti, Paul, Camacho, Diogo, Dreyfuss, Jonathan, Liu, Yang, Dorhoi, Anca, Mollenkopf, Hans-Joachim, Drogaris, Paul, Lamontagne, Julie, Zhou, Yiyong, Piquenot, Julie, Park, Sang Tae, Raman, Sahadevan, Kaufmann, Stefan H. E., Mohney, Robert P., Chelsky, Daniel, Moody, D. Branch, Sherman, David R., Schoolnik, Gary K.

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Comprehensive genomic characterization defines human glioblastoma genes and core pathways von McLendon, Roger, Friedman, Allan, Bigner, Darrell, Brat, Daniel J, M Mastrogianakis, Gena, Lehman, Norman, Aldape, Ken, Bogler, Oliver, Nazareth, Lynn, Hall, Otis, Zhu, Yiming, Jhangiani, Shalini, San Lucas, Anthony, Kovar, Christie, Dinh, Huyen, Santibanez, Jireh, Joshi, Vandita, Wilkinson, Jane, Onofrio, Robert, Ardlie, Kristin, Gabriel, Stacey, Ding, Li, McLellan, Michael D, Shi, Xiaoqi, Abbott, Rachel, Fulton, Lucinda, Meyer, Rick, Osborne, John R, Dunford-Shore, Brian H, Delehaunty, Kim, Swift, Gary, Pohl, Craig, Leong, Shin, Haipek, Carrie, Schmidt, Heather, Vickery, Tammi, Chinwalla, Asif, Weinstock, George M, Mardis, Elaine R, Verhaak, Roel GW, O'Kelly, Michael, Beroukhim, Rameen, Carter, Scott, Chiang, Derek, Gould, Josh, Korn, Josh, Mermel, Craig, Monti, Stefano, Nguyen, Huy, Parkin, Melissa, Stransky, Nicolas, Meyerson, Matthew, Protopopov, Alexei, Zhang, Jianhua, Perna, Ilana, Yao, Jun, Kim, Hyunsoo, Kohane, Isaac S, Seidman, Jon, Kucherlapati, Raju, Laird, Peter W, Cope, Leslie, Herman, James G, Weisenberger, Daniel J, Mi Yi, Joo, Southwick, Audrey, Aggarwal, Amita, Brooks, James D, Spellman, Paul T, Marr, Henry, Gi Choi, Yoon, Wang, Victoria, Robinson, Mark, Peng, Vivian, Fontenay, Gerald V, Parvin, Bahram, Speed, Terence P, Gray, Joe W, Brennan, Cameron, Olshen, Adam, Schultz, Nikolaus, Stukalov, Alexey, Cerami, Ethan, Qin, Li-Xuan, Ladanyi, Marc, Neil Hayes, D, Topal, Michael D, Shi, Yan, Penny, Robert, Lenkiewicz, Elizabeth, Morris, Scott, Kahn, Ari, Chen, Jessica, Nassau, David, Hickey, Erin, Vockley, Joseph, Vaught, Jim, Madhavan, Subhashree, Guyer, Mark, Thomson, Elizabeth

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Integrated plasma proteomics identifies tuberculosis-specific diagnostic biomarkers von Schiff, Hannah F, Walker, Naomi F, Ugarte-Gil, Cesar, Tebruegge, Marc, Manousopoulou, Antigoni, Garbis, Spiros D, Mansour, Salah, Wong, Pak Ho Michael, Rockett, Gabrielle, Piazza, Paolo, Niranjan, Mahesan, Vallejo, Andres F, Woelk, Christopher H, Wilkinson, Robert J, Tezera, Liku B, Garay-Baquero, Diana, Elkington, Paul

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Candidate gene database and transcript map for peach, a model species for fruit trees von Horn, R, Lecouls, A.C, Callahan, A, Dandekar, A, Garay, L, McCord, P, Howad, W, Chan, H, Verde, I, Main, D

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Somatic mutations affect key pathways in lung adenocarcinoma von Ding, Li, Getz, Gad, Wheeler, David A, Mardis, Elaine R, McLellan, Michael D, Cibulskis, Kristian, Sougnez, Carrie, Greulich, Heidi, Muzny, Donna M, Morgan, Margaret B, Fulton, Lucinda, Fulton, Robert S, Zhang, Qunyuan, Wendl, Michael C, Lawrence, Michael S, Larson, David E, Chen, Ken, Dooling, David J, Sabo, Aniko, Hawes, Alicia C, Shen, Hua, Jhangiani, Shalini N, Lewis, Lora R, Hall, Otis, Zhu, Yiming, Mathew, Tittu, Ren, Yanru, Yao, Jiqiang, Scherer, Steven E, Clerc, Kerstin, Metcalf, Ginger A, Ng, Brian, Milosavljevic, Aleksandar, Gonzalez-Garay, Manuel L, Osborne, John R, Meyer, Rick, Shi, Xiaoqi, Tang, Yuzhu, Koboldt, Daniel C, Lin, Ling, Abbott, Rachel, Miner, Tracie L, Pohl, Craig, Fewell, Ginger, Haipek, Carrie, Schmidt, Heather, Dunford-Shore, Brian H, Kraja, Aldi, Crosby, Seth D, Sawyer, Christopher S, Vickery, Tammi, Sander, Sacha, Robinson, Jody, Winckler, Wendy, Baldwin, Jennifer, Chirieac, Lucian, Dutt, Amit, Fennell, Tim, Hanna, Megan, Johnson, Bruce, Onofrio, Robert C, Thomas, Roman, Tonon, Giovanni, Weir, Barbara, Zhao, Xiaojun, Ziaugra, Liuda, Zody, Michael, Giordano, Thomas, Orringer, Mark B, Roth, Jack A, Spitz, Margaret R, Wistuba, Ignacio I, Ozenberger, Bradley, Good, Peter J, Chang, Andrew C, Beer, David G, Watson, Mark A, Ladanyi, Marc, Broderick, Stephen, Yoshizawa, Akihiko, Travis, William D, Pao, William, Province, Michael A, Weinstock, George M, Varmus, Harold E, Gabriel, Stacey B, Lander, Eric, Gibbs, Richard A, Meyerson, Matthew, Wilson, Richard K

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Determinants of penetrance and variable expressivity in monogenic metabolic conditions across 77,184 exomes von Goodrich, Julia K, Singer-Berk, Moriel, Son, Rachel, Sveden, Abigail, Wood, Jordan, England, Eleina, Cole, Joanne B, Weisburd, Ben, Watts, Nick, Koesterer, Ryan, Zappala, Zachary, Zhang, Haichen, Maloney, Kristin A, Dahl, Andy, Aguilar-Salinas, Carlos A, Atzmon, Gil, Barajas-Olmos, Francisco, Boerwinkle, Eric, Bonnycastle, Lori L, Bottinger, Erwin, Centeno-Cruz, Federico, Chambers, John C, Chami, Nathalie, Chan, Edmund, Chan, Juliana, Cho, Yoon Shin, Contreras-Cubas, Cecilia, Córdova, Emilio, Correa, Adolfo, Duggirala, Ravindranath, Dupuis, Josée, Garay-Sevilla, Ma Eugenia, García-Ortiz, Humberto, Gieger, Christian, Glaser, Benjamin, Gonzalez, Ma Elena, Groop, L, Gross, Myron, Haiman, Christopher A, Han, Sohee, Hansen, Torben, Henderson, Brian E, Hernandez, Juan Manuel Malacara, Hwang, Mi Yeong, Kang, Hyun Min, Kim, Bong-Jo, Kim, Young Jin, Koistinen, Heikki A, Kooner, Jaspal Singh, Laakso, Markku, Lange, Leslie, Lee, Juyoung, Lehman, Donna M, Linneberg, Allan, Ma, Ronald C. W, Martínez-Hernández, Angélica, Mendoza-Caamal, Elvia, Mohlke, Karen L, Morris, AD, Morrison, Alanna C, Ng, Maggie C. Y, Nilsson, Peter M, Orozco, Lorena, Palmer, Colin N. A, Park, Kyong Soo, Post, W, Pedersen, Oluf, Reiner, Alexander P, Revilla-Monsalve, Cristina, Rich, Stephen S, Saleheen, Danish, Schurmann, Claudia, Sladek, Rob, Small, Kerrin S, So, Wing Yee, Strom, Tim M, Tai, E. Shyong, Tam, Claudia H. T, Teo, Yik Ying, Thameem, Farook, Tomlinson, Brian, Tracy, Russell P, Tuomilehto, Jaakko, Tusié-Luna, Teresa, van Dam, Rob M, Vasan, Ramachandran S, Wilson, James G, Witte, Daniel R, Wong, Tien-Yin, Zaitlen, Noah, McCarthy, Mark I, Boehnke, Michael, Pollin, Toni I, Flannick, Jason, Mercader, Josep M, O’Donnell-Luria, Anne, Baxter, Samantha, Florez, Jose C, MacArthur, Daniel G, Udler, MS

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