The Salmonella In Silico Typing Resource (SISTR): An Open Web-Accessible Tool for Rapidly Typing and Subtyping Draft Salmonella Genome Assemblies von Yoshida, Catherine E, Kruczkiewicz, Peter, Laing, Chad R, Lingohr, Erika J, Gannon, Victor P J, Nash, John H E, Taboada, Eduardo N

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Distribution of heavy metal resistance elements in Canadian Salmonella 4,[5],12:i:- populations and association with the monophasic genotypes and phenotype von Clark, Clifford G, Landgraff, Chrystal, Robertson, James, Pollari, Frank, Parker, Stephen, Nadon, Celine, Gannon, Victor P J, Johnson, Roger, Nash, John

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Pan-genome sequence analysis using Panseq: an online tool for the rapid analysis of core and accessory genomic regions von Laing, Chad, Buchanan, Cody, Taboada, Eduardo N, Zhang, Yongxiang, Kropinski, Andrew, Villegas, Andre, Thomas, James E, Gannon, Victor P J

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Agricultural tile drains increase the susceptibility of streams to longer and more intense streamflow droughts von Adelsperger, Seth R, Ficklin, Darren L, Robeson, Scott M, Zimmer, Margaret A, Hammond, John C, Hall, Damon M, Gannon, J P

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A comparison of Shiga-toxin 2 bacteriophage from classical enterohemorrhagic Escherichia coli serotypes and the German E. coli O104:H4 outbreak strain von Laing, Chad R, Zhang, Yongxiang, Gilmour, Matthew W, Allen, Vanessa, Johnson, Roger, Thomas, James E, Gannon, Victor P J

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Genome evolution in major Escherichia coli O157:H7 lineages von Zhang, Yongxiang, Laing, Chad, Steele, Marina, Ziebell, Kim, Johnson, Roger, Benson, Andrew K, Taboada, Eduardo, Gannon, Victor P J

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Detection of Bacteroidales Fecal Indicators and the Zoonotic Pathogens E. coli O157:H7, Salmonella, and Campylobacter in River Water von Walters, Sarah P, Gannon, Victor P. J, Field, Katharine G

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Comparative Genomic Analysis of Escherichia coli O157:H7 Isolated from Super-Shedder and Low-Shedder Cattle von Munns, Krysty D, Zaheer, Rahat, Xu, Yong, Stanford, Kim, Laing, Chad R, Gannon, Victor P J, Selinger, L Brent, McAllister, Tim A

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Quantitative multi-year elucidation of fecal sources of waterborne pathogen contamination in the South Nation River basin using Bacteroidales microbial source tracking markers von Marti, Romain, Gannon, Victor P.J., Jokinen, Cassandra, Lanthier, Martin, Lapen, David R., Neumann, Norman F., Ruecker, Norma J., Scott, Andrew, Wilkes, Graham, Zhang, Yun, Topp, Edward

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Development and Validation of a Comparative Genomic Fingerprinting Method for High-Resolution Genotyping of Campylobacter jejuni von TABOADA, Eduardo N, ROSS, Susan L, GANNON, Victor P. J, MARSHALL, Barbara, POLLARI, Frank, CLARK, Clifford G, MUTSCHALL, Steven K, MACKINNON, Joanne M, ROBERTS, Michael J, BUCHANAN, Cody J, KRUCZKIEWICZ, Peter, JOKINEN, Cassandra C, THOMAS, James E, NASH, John H. E

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Controls on watershed flashiness across the continental US von Gannon, J.P., Kelleher, Christa, Zimmer, Margaret

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Spatiotemporal Analysis of Cryptosporidium Species/Genotypes and Relationships with Other Zoonotic Pathogens in Surface Water from Mixed-Use Watersheds von WILKES, Graham, RUECKER, Norma J, NEUMANN, Norman F, GANNON, Victor P. J, JOKINEN, Cassandra, SUNOHARA, Mark, TOPP, Edward, PINTAR, Katarina D. M, EDGE, Thomas A, LAPEN, David R

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ECTyper: in silico Escherichia coli serotype and species prediction from raw and assembled whole-genome sequence data von Bessonov, Kyrylo, Laing, Chad, Robertson, James, Yong, Irene, Ziebell, Kim, Gannon, Victor P J, Nichani, Anil, Arya, Gitanjali, Nash, John H E, Christianson, Sara

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Lineage and Host Source Are Both Correlated with Levels of Shiga Toxin 2 Production by Escherichia coli O157:H7 Strains von Zhang, Yongxiang, Laing, Chad, Zhang, Zhengzhong, Hallewell, Jennyka, You, Chunping, Ziebell, Kim, Johnson, Roger P, Kropinski, Andrew M, Thomas, James E, Karmali, Mohamed, Gannon, Victor P.J

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Pan-genome Analyses of the Species Salmonella enterica , and Identification of Genomic Markers Predictive for Species, Subspecies, and Serovar von Laing, Chad R, Whiteside, Matthew D, Gannon, Victor P J

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Associations among pathogenic bacteria, parasites, and environmental and land use factors in multiple mixed-use watersheds von Wilkes, G., Edge, T.A., Gannon, V.P.J., Jokinen, C., Lyautey, E., Neumann, N.F., Ruecker, N., Scott, A., Sunohara, M., Topp, E., Lapen, D.R.

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An enhanced technique combining pre-enrichment and passive filtration increases the isolation efficiency of Campylobacter jejuni and Campylobacter coli from water and animal fecal... von Jokinen, Cassandra C., Koot, Jacqueline M., Carrillo, Catherine D., Gannon, Victor P.J., Jardine, Claire M., Mutschall, Steven K., Topp, Edward, Taboada, Eduardo N.

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Exploiting the explosion of information associated with whole genome sequencing to tackle Shiga toxin-producing Escherichia coli (STEC) in global food production systems von Franz, Eelco, Delaquis, Pascal, Morabito, Stefano, Beutin, Lothar, Gobius, Kari, Rasko, David A., Bono, Jim, French, Nigel, Osek, Jacek, Lindstedt, Bjørn-Arne, Muniesa, Maite, Manning, Shannon, LeJeune, Jeff, Callaway, Todd, Beatson, Scott, Eppinger, Mark, Dallman, Tim, Forbes, Ken J., Aarts, Henk, Pearl, David L., Gannon, Victor P.J., Laing, Chad R., Strachan, Norval J.C.

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A Genome-Wide Association Study to Identify Diagnostic Markers for Human Pathogenic Campylobacter jejuni Strains von Buchanan, Cody J, Webb, Andrew L, Mutschall, Steven K, Kruczkiewicz, Peter, Barker, Dillon O R, Hetman, Benjamin M, Gannon, Victor P J, Abbott, D Wade, Thomas, James E, Inglis, G Douglas, Taboada, Eduardo N

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"These Aren't the Strains You're Looking for": Recovery Bias of Common Campylobacter jejuni Subtypes in Mixed Cultures von Hetman, Benjamin M, Mutschall, Steven K, Carrillo, Catherine D, Thomas, James E, Gannon, Victor P J, Inglis, G Douglas, Taboada, Eduardo N

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