Hydrogen peroxide production and myo‐inositol metabolism as important traits for virulence of Mycoplasma hyopneumoniae von Ferrarini, Mariana Galvão, Mucha, Scheila Gabriele, Parrot, Delphine, Meiffrein, Guillaume, Ruggiero Bachega, Jose Fernando, Comte, Gilles, Zaha, Arnaldo, Sagot, Marie‐France

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MicroRNA Target Identification: Revisiting Accessibility and Seed Anchoring von Homberg, Nicolas, Galvão Ferrarini, Mariana, Gaspin, Christine, Sagot, Marie-France

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A comprehensive evaluation of binning methods to recover human gut microbial species from a non-redundant reference gene catalog von Borderes, Marianne, Gasc, Cyrielle, Prestat, Emmanuel, Galvão Ferrarini, Mariana, Vinga, Susana, Boucinha, Lilia, Sagot, Marie-France

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Efficient compartmentalization in insect bacteriomes protects symbiotic bacteria from host immune system von Ferrarini, Mariana Galvão, Dell’Aglio, Elisa, Vallier, Agnès, Balmand, Séverine, Vincent-Monégat, Carole, Hughes, Sandrine, Gillet, Benjamin, Parisot, Nicolas, Zaidman-Rémy, Anna, Vieira, Cristina, Heddi, Abdelaziz, Rebollo, Rita

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Endosymbiont-containing germarium transcriptional survey in a cereal weevil depicts downregulation of immune effectors at the onset of sexual maturity von Ferrarini, Mariana Galvão, Vallier, Agnès, Dell'Aglio, Elisa, Balmand, Séverine, Vincent-Monégat, Carole, Debbache, Mériem, Maire, Justin, Parisot, Nicolas, Zaidman-Rémy, Anna, Heddi, Abdelaziz, Rebollo, Rita

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BrumiR: A toolkit for de novo discovery of microRNAs from sRNA-seq data von Moraga, Carol, Sanchez, Evelyn, Ferrarini, Mariana Galvão, Gutierrez, Rodrigo A, Vidal, Elena A, Sagot, Marie-France

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Coordination of host and endosymbiont gene expression governs endosymbiont growth and elimination in the cereal weevil Sitophilus spp von Ferrarini, Mariana Galvão, Vallier, Agnès, Vincent-Monégat, Carole, Dell'Aglio, Elisa, Gillet, Benjamin, Hughes, Sandrine, Hurtado, Ophélie, Condemine, Guy, Zaidman-Rémy, Anna, Rebollo, Rita, Parisot, Nicolas, Heddi, Abdelaziz

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Totoro: Identifying Active Reactions During the Transient State for Metabolic Perturbations von Galvão Ferrarini, Mariana, Ziska, Irene, Andrade, Ricardo, Julien-Laferrière, Alice, Duchemin, Louis, César, Jr, Roberto Marcondes, Mary, Arnaud, Vinga, Susana, Sagot, Marie-France

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Modulation of Klebsiella pneumoniae Outer Membrane Vesicle Protein Cargo under Antibiotic Treatment von Lucena, Aline Castro Rodrigues, Ferrarini, Mariana Galvão, de Oliveira, Willian Klassen, Marcon, Bruna Hilzendeger, Morello, Luis Gustavo, Alves, Lysangela Ronalte, Faoro, Helisson

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Transcriptomic-based selection of reference genes for quantitative real-time PCR in an insect endosymbiotic model von Vallier, Agnès, Dell’Aglio, Elisa, Ferrarini, Mariana Galvão, Hurtado, Ophélie, Vincent-Monégat, Carole, Heddi, Abdelaziz, Rebollo, Rita, Zaidman-Rémy, Anna

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Dichloroacetate and Pyruvate Metabolism: Pyruvate Dehydrogenase Kinases as Targets Worth Investigating for Effective Therapy of Toxoplasmosis von Ferrarini, Mariana Galvão, Nisimura, Lindice Mitie, Girard, Richard Marcel Bruno Moreira, Alencar, Mayke Bezerra, Fragoso, Mariana Sayuri Ishikawa, Araújo-Silva, Carlla Assis, Veiga, Alan de Almeida, Abud, Ana Paula Ressetti, Nardelli, Sheila Cristina, Vommaro, Rossiane C, Silber, Ariel Mariano, France-Sagot, Marie, Ávila, Andréa Rodrigues

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Spatial and morphological reorganization of endosymbiosis during metamorphosis accommodates adult metabolic requirements in a weevil von Maire, Justin, Parisot, Nicolas, Ferrarini, Mariana Galvao, Vallier, Agnès, Gillet, Benjamin, Hughes, Sandrine, Balmand, Séverine, Vincent-Monégat, Carole, Zaidman-Rémy, Anna, Heddi, Abdelaziz

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The transposable element-rich genome of the cereal pest Sitophilus oryzae von Parisot, Nicolas, Vargas-Chávez, Carlos, Goubert, Clément, Baa-Puyoulet, Patrice, Balmand, Séverine, Beranger, Louis, Blanc, Caroline, Bonnamour, Aymeric, Boulesteix, Matthieu, Burlet, Nelly, Calevro, Federica, Callaerts, Patrick, Chancy, Théo, Charles, Hubert, Colella, Stefano, Da Silva Barbosa, André, Dell'Aglio, Elisa, Di Genova, Alex, Febvay, Gérard, Gabaldón, Toni, Galvão Ferrarini, Mariana, Gerber, Alexandra, Gillet, Benjamin, Hubley, Robert, Hughes, Sandrine, Jacquin-Joly, Emmanuelle, Maire, Justin, Marcet-Houben, Marina, Masson, Florent, Meslin, Camille, Montagné, Nicolas, Moya, Andrés, Ribeiro de Vasconcelos, Ana Tereza, Richard, Gautier, Rosen, Jeb, Sagot, Marie-France, Smit, Arian F A, Storer, Jessica M, Vincent-Monegat, Carole, Vallier, Agnès, Vigneron, Aurélien, Zaidman-Rémy, Anna, Zamoum, Waël, Vieira, Cristina, Rebollo, Rita, Latorre, Amparo, Heddi, Abdelaziz

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Investigating the Human Host-ssRNA Virus Interaction Landscape Using the SMEAGOL Toolbox von Lal, Avantika, Galvao Ferrarini, Mariana, Gruber, Andreas J

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Inter-Strain Epigenomic Profiling Reveals a Candidate IAP Master Copy in C3H Mice von Rebollo, Rita, Galvão-Ferrarini, Mariana, Gagnier, Liane, Zhang, Ying, Ferraj, Ardian, Beck, Christine R, Lorincz, Matthew C, Mager, Dixie L

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Trypanosoma cruzi XRNA granules colocalise with distinct mRNP granules at the nuclear periphery von Costa, Jimena Ferreira da, Ferrarini, Mariana Galvão, Nardelli, Sheila Cristina, Goldenberg, Samuel, Ávila, Andréa Rodrigues, Holetz, Fabíola Barbieri

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MOOMIN – Mathematical explOration of ’Omics data on a MetabolIc Network von Pusa, Taneli, Ferrarini, Mariana Galvão, Andrade, Ricardo, Mary, Arnaud, Marchetti-Spaccamela, Alberto, Stougie, Leen, Sagot, Marie-France

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Phenotypic and Transcriptomic Responses to Stress Differ According to Population Geography in an Invasive Species von Marin, Pierre, Jaquet, Angelo, Picarle, Justine, Fablet, Marie, Merel, Vincent, Delignette-Muller, Marie-Laure, Ferrarini, Mariana Galvão, Gibert, Patricia, Vieira, Cristina

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Trypanosoma cruzi eIF4E3- and eIF4E4-containing complexes bind different mRNAs and may sequester inactive mRNAs during nutritional stress von Gabiatti, Bernardo Papini, Freire, Eden Ribeiro, Ferreira da Costa, Jimena, Ferrarini, Mariana Galvão, Reichert Assunção de Matos, Tatiana, Preti, Henrique, Munhoz da Rocha, Isadora, Guimarães, Beatriz Gomes, Kramer, Susanne, Zanchin, Nilson Ivo Tonin, Holetz, Fabíola Barbieri

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Modulation of IKlebsiella pneumoniae/I Outer Membrane Vesicle Protein Cargo under Antibiotic Treatment von Lucena, Aline Castro Rodrigues, Ferrarini, Mariana Galvão, de Oliveira, Willian Klassen, Marcon, Bruna Hilzendeger, Morello, Luis Gustavo, Alves, Lysangela Ronalte, Faoro, Helisson

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