Correlation between in vivo biofilm formation and virulence gene expression in Escherichia coli O104:H4 von Al Safadi, Rim, Abu-Ali, Galeb S, Sloup, Rudolph E, Rudrik, James T, Waters, Christopher M, Eaton, Kathryn A, Manning, Shannon D

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Increased adherence and expression of virulence genes in a lineage of Escherichia coli O157:H7 commonly associated with human infections von Abu-Ali, Galeb S, Ouellette, Lindsey M, Henderson, Scott T, Lacher, David W, Riordan, James T, Whittam, Thomas S, Manning, Shannon D

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Assessment of variation in microbial community amplicon sequencing by the Microbiome Quality Control (MBQC) project consortium von Sinha, Rashmi, Abu-Ali, Galeb, Vogtmann, Emily, Fodor, Anthony A, Ren, Boyu, Amir, Amnon, Schwager, Emma, Crabtree, Jonathan, Ma, Siyuan, Abnet, Christian C, Knight, Rob, White, Owen, Huttenhower, Curtis

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Sequencing and beyond: integrating molecular 'omics' for microbial community profiling von Franzosa, Eric A., Hsu, Tiffany, Sirota-Madi, Alexandra, Shafquat, Afrah, Abu-Ali, Galeb, Morgan, Xochitl C., Huttenhower, Curtis

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Variability in the Occupancy of Escherichia coli O157 Integration Sites by Shiga Toxin-Encoding Prophages von Henderson, Scott T, Singh, Pallavi, Knupp, David, Lacher, David W, Abu-Ali, Galeb S, Rudrik, James T, Manning, Shannon D

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The Role of Gut Microbiome in the Pathogenesis of Prostate Cancer: A Prospective, Pilot Study von Golombos, David M., Ayangbesan, Abimbola, O'Malley, Padraic, Lewicki, Patrick, Barlow, LaMont, Barbieri, Christopher E., Chan, Chrystal, DuLong, Casey, Abu-Ali, Galeb, Huttenhower, Curtis, Scherr, Douglas S.

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Association Between Sulfur-Metabolizing Bacterial Communities in Stool and Risk of Distal Colorectal Cancer in Men von Nguyen, Long H., Ma, Wenjie, Wang, Dong D., Cao, Yin, Mallick, Himel, Gerbaba, Teklu K., Lloyd-Price, Jason, Abu-Ali, Galeb, Hall, A. Brantley, Sikavi, Daniel, Drew, David A., Mehta, Raaj S., Arze, Cesar, Joshi, Amit D., Yan, Yan, Branck, Tobyn, DuLong, Casey, Ivey, Kerry L., Ogino, Shuji, Rimm, Eric B., Song, Mingyang, Garrett, Wendy S., Izard, Jacques, Huttenhower, Curtis, Chan, Andrew T.

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Genomic diversity of pathogenic Escherichia coli of the EHEC 2 clonal complex von Abu-Ali, Galeb S, Lacher, David W, Wick, Lukas M, Qi, Weihong, Whittam, Thomas S

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Sex Differences in Pulmonary Responses to Ozone in Mice. Role of the Microbiome von Cho, Youngji, Abu-Ali, Galeb, Tashiro, Hiroki, Brown, Traci A, Osgood, Ross S, Kasahara, David I, Huttenhower, Curtis, Shore, Stephanie A

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Microbiota Contribute to Obesity-related Increases in the Pulmonary Response to Ozone von Tashiro, Hiroki, Cho, Youngji, Kasahara, David I, Brand, Jeffrey D, Bry, Lynn, Yeliseyev, Vladimir, Abu-Ali, Galeb, Huttenhower, Curtis, Shore, Stephanie A

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Differences in adherence and virulence gene expression between two outbreak strains of enterohaemorrhagic Escherichia coli O157 : H7 von Abu-Ali, Galeb S, Ouellette, Lindsey M, Henderson, Scott T, Whittam, Thomas S, Manning, Shannon D

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The Microbiome Regulates Pulmonary Responses to Ozone in Mice von Cho, Youngji, Abu-Ali, Galeb, Tashiro, Hiroki, Kasahara, David I, Brown, Traci A, Brand, Jeffrey D, Mathews, Joel A, Huttenhower, Curtis, Shore, Stephanie A

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Stability of the human faecal microbiome in a cohort of adult men von Mehta, Raaj S., Abu-Ali, Galeb S., Drew, David A., Lloyd-Price, Jason, Subramanian, Ayshwarya, Lochhead, Paul, Joshi, Amit D., Ivey, Kerry L., Khalili, Hamed, Brown, Gordon T., DuLong, Casey, Song, Mingyang, Nguyen, Long H., Mallick, Himel, Rimm, Eric B., Izard, Jacques, Huttenhower, Curtis, Chan, Andrew T.

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Metatranscriptome of human faecal microbial communities in a cohort of adult men von Abu-Ali, Galeb S., Mehta, Raaj S., Lloyd-Price, Jason, Mallick, Himel, Branck, Tobyn, Ivey, Kerry L., Drew, David A., DuLong, Casey, Rimm, Eric, Izard, Jacques, Chan, Andrew T., Huttenhower, Curtis

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Structure of the Mucosal and Stool Microbiome in Lynch Syndrome von Yan, Yan, Drew, David A., Markowitz, Arnold, Lloyd-Price, Jason, Abu-Ali, Galeb, Nguyen, Long H., Tran, Christina, Chung, Daniel C., Gilpin, Katherine K., Meixell, Dana, Parziale, Melanie, Schuck, Madeline, Patel, Zalak, Richter, James M., Kelsey, Peter B., Garrett, Wendy S., Chan, Andrew T., Stadler, Zsofia K., Huttenhower, Curtis

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Fluoride Depletes Acidogenic Taxa in Oral but Not Gut Microbial Communities in Mice von Yasuda, Koji, Hsu, Tiffany, Gallini, Carey A, Mclver, Lauren J, Schwager, Emma, Shi, Andy, DuLong, Casey R, Schwager, Randall N, Abu-Ali, Galeb S, Franzosa, Eric A, Garrett, Wendy S, Huttenhower, Curtis, Morgan, Xochitl C

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Urban Transit System Microbial Communities Differ by Surface Type and Interaction with Humans and the Environment von Hsu, Tiffany, Joice, Regina, Vallarino, Jose, Abu-Ali, Galeb, Hartmann, Erica M, Shafquat, Afrah, DuLong, Casey, Baranowski, Catherine, Gevers, Dirk, Green, Jessica L, Morgan, Xochitl C, Spengler, John D, Huttenhower, Curtis

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Shiga toxin 2 overexpression in Escherichia coli O157:H7 strains associated with severe human disease von Neupane, Mahesh, Abu-Ali, Galeb S., Mitra, Avishek, Lacher, David W., Manning, Shannon D., Riordan, James T.

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Pathogenesis of Renal Disease Due to Enterohemorrhagic Escherichia coli in Germ-Free Mice von Eaton, Kathryn A, Friedman, David I, Francis, Gayle J, Tyler, Jessica S, Young, Vincent B, Haeger, Jennifer, Abu-Ali, Galeb, Whittam, Thomas S

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The healthy human microbiome von Lloyd-Price, Jason, Abu-Ali, Galeb, Huttenhower, Curtis

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