Insight into the ecology of vaginal bacteria through integrative analyses of metagenomic and metatranscriptomic data von France, Michael T, Fu, Li, Rutt, Lindsay, Yang, Hongqiu, Humphrys, Michael S, Narina, Shilpa, Gajer, Pawel M, Ma, Bing, Forney, Larry J, Ravel, Jacques

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Additional file 6 of Insight into the ecology of vaginal bacteria through integrative analyses of metagenomic and metatranscriptomic data von France, Michael T., Fu, Li, Rutt, Lindsay, Yang, Hongqiu, Humphrys, Michael S., Narina, Shilpa, Gajer, Pawel M., Ma, Bing, Forney, Larry J., Ravel, Jacques

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Additional file 3 of Insight into the ecology of vaginal bacteria through integrative analyses of metagenomic and metatranscriptomic data von France, Michael T., Fu, Li, Rutt, Lindsay, Yang, Hongqiu, Humphrys, Michael S., Narina, Shilpa, Gajer, Pawel M., Ma, Bing, Forney, Larry J., Ravel, Jacques

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Additional file 5 of Insight into the ecology of vaginal bacteria through integrative analyses of metagenomic and metatranscriptomic data von France, Michael T., Fu, Li, Rutt, Lindsay, Yang, Hongqiu, Humphrys, Michael S., Narina, Shilpa, Gajer, Pawel M., Ma, Bing, Forney, Larry J., Ravel, Jacques

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Additional file 4 of Insight into the ecology of vaginal bacteria through integrative analyses of metagenomic and metatranscriptomic data von France, Michael T., Fu, Li, Rutt, Lindsay, Yang, Hongqiu, Humphrys, Michael S., Narina, Shilpa, Gajer, Pawel M., Ma, Bing, Forney, Larry J., Ravel, Jacques

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Interplay Between the Temporal Dynamics of the Vaginal Microbiota and Human Papillomavirus Detection von Brotman, Rebecca M., Shardell, Michelle D., Gajer, Pawel, Tracy, J. Kathleen, Zenilman, Jonathan M., Ravel, Jacques, Gravitt, Patti E.

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VALENCIA: a nearest centroid classification method for vaginal microbial communities based on composition von France, Michael T, Ma, Bing, Gajer, Pawel, Brown, Sarah, Humphrys, Michael S, Holm, Johanna B, Waetjen, L Elaine, Brotman, Rebecca M, Ravel, Jacques

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An improved dual-indexing approach for multiplexed 16S rRNA gene sequencing on the Illumina MiSeq platform von Fadrosh, Douglas W, Ma, Bing, Gajer, Pawel, Sengamalay, Naomi, Ott, Sandra, Brotman, Rebecca M, Ravel, Jacques

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Vaginal microbiome of reproductive-age women von Ravel, Jacques, Gajer, Pawel, Abdo, Zaid, Schneider, G. Maria, Koenig, Sara S.K, McCulle, Stacey L, Karlebach, Shara, Gorle, Reshma, Russell, Jennifer, Tacket, Carol O, Brotman, Rebecca M, Davis, Catherine C, Ault, Kevin, Peralta, Ligia, Forney, Larry J

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The Cervicovaginal Microbiota-Host Interaction Modulates Chlamydia trachomatis Infection von Edwards, Vonetta L, Smith, Steven B, McComb, Elias J, Tamarelle, Jeanne, Ma, Bing, Humphrys, Michael S, Gajer, Pawel, Gwilliam, Kathleen, Schaefer, Alison M, Lai, Samuel K, Terplan, Mishka, Mark, Katrina S, Brotman, Rebecca M, Forney, Larry J, Bavoil, Patrik M, Ravel, Jacques

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Ultrahigh-Throughput Multiplexing and Sequencing of >500-Base-Pair Amplicon Regions on the Illumina HiSeq 2500 Platform von Holm, Johanna B, Humphrys, Michael S, Robinson, Courtney K, Settles, Matthew L, Ott, Sandra, Fu, Li, Yang, Hongqiu, Gajer, Pawel, He, Xin, McComb, Elias, Gravitt, Patti E, Ghanem, Khalil G, Brotman, Rebecca M, Ravel, Jacques

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The Pangenome Structure of Escherichia coli: Comparative Genomic Analysis of E. coli Commensal and Pathogenic Isolates von RASKO, David A, ROSOVITZ, M. J, HENDERSON, Ian R, SPERANDIO, Vanessa, RAVEL, Jacques, MYERS, Garry S. A, MONGODIN, Emmanuel F, FRICKE, W. Florian, GAJER, Pawel, CRABTREE, Jonathan, SEBAIHIA, Mohammed, THOMSON, Nicholas R, CHAUDHURI, Roy

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Association between cigarette smoking and the vaginal microbiota: a pilot study von Brotman, Rebecca M, He, Xin, Gajer, Pawel, Fadrosh, Doug, Sharma, Eva, Mongodin, Emmanuel F, Ravel, Jacques, Glover, Elbert D, Rath, Jessica M

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Vaginal microbiota and mucosal pharmacokinetics of tenofovir in healthy women using tenofovir and tenofovir/levonorgestrel vaginal rings von Thurman, Andrea Ries, Schwartz, Jill L, Ravel, Jacques, Gajer, Pawel, Marzinke, Mark A, Yousefieh, Nazita, Anderson, Sharon M, Doncel, Gustavo F

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Association Between Trichomonas vaginalis and Vaginal Bacterial Community Composition Among Reproductive-Age Women von Brotman, Rebecca M., Bradford, L. Latey, Conrad, Melissa, Gajer, Pawel, Ault, Kevin, Peralta, Ligia, Forney, Larry J., Carlton, Jane M., Abdo, Zaid, Ravel, Jacques

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Integrating compositional and functional content to describe vaginal microbiomes in health and disease von Holm, Johanna B, France, Michael T, Gajer, Pawel, Ma, Bing, Brotman, Rebecca M, Shardell, Michelle, Forney, Larry, Ravel, Jacques

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Nonoptimal Vaginal Microbiota After Azithromycin Treatment for Chlamydia trachomatis Infection von Tamarelle, Jeanne, Ma, Bing, Gajer, Pawel, Humphrys, Mike S, Terplan, Mishka, Mark, Katrina S, Thiébaut, Anne C M, Forney, Larry J, Brotman, Rebecca M, Delarocque-Astagneau, Elisabeth, Bavoil, Patrik M, Ravel, Jacques

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Asymptomatic Bacterial Vaginosis Is Associated With Depletion of Mature Superficial Cells Shed From the Vaginal Epithelium von O'Hanlon, D Elizabeth, Gajer, Pawel, Brotman, Rebecca M, Ravel, Jacques

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Daily temporal dynamics of vaginal microbiota before, during and after episodes of bacterial vaginosis von Ravel, Jacques, Brotman, Rebecca M, Gajer, Pawel, Ma, Bing, Nandy, Melissa, Fadrosh, Douglas W, Sakamoto, Joyce, Koenig, Sara Sk, Fu, Li, Zhou, Xia, Hickey, Roxana J, Schwebke, Jane R, Forney, Larry J

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Microbial Biomarkers of Intestinal Barrier Maturation in Preterm Infants von Ma, Bing, McComb, Elias, Gajer, Pawel, Yang, Hongqiu, Humphrys, Mike, Okogbule-Wonodi, Adora C, Fasano, Alessio, Ravel, Jacques, Viscardi, Rose M

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