Prospective Study of a Serogroup X Neisseria meningitidis Outbreak in Northern Ghana von Gagneux, Sébastien P., Hodgson, Abraham, Smith, Tom A., Wirth, Thierry, Ehrhard, Ingrid, Morelli, Giovanna, Genton, Blaise, Binka, Fred N., Achtman, Mark, Pluschke, Gerd

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Mycobacterium tuberculosis Beijing genotype is associated with HIV infection in Mozambique von Viegas, Sofia O, Machado, Adelina, Groenheit, Ramona, Ghebremichael, Solomon, Pennhag, Alexandra, Gudo, Paula S, Cuna, Zaina, Langa, Egídio, Miotto, Paolo, Cirillo, Daniela M, Rastogi, Nalin, Warren, Rob M, van Helden, Paul D, Koivula, Tuija, Källenius, Gunilla

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Genotyping of genetically monomorphic bacteria: DNA sequencing in Mycobacterium tuberculosis highlights the limitations of current methodologies von Comas, Iñaki, Homolka, Susanne, Niemann, Stefan, Gagneux, Sebastien

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Mycobacterium tuberculosis associated with severe tuberculosis evades cytosolic surveillance systems and modulates IL-1β production von Sousa, Jeremy, Cá, Baltazar, Maceiras, Ana Raquel, Simões-Costa, Luisa, Fonseca, Kaori L., Fernandes, Ana Isabel, Ramos, Angélica, Carvalho, Teresa, Barros, Leandro, Magalhães, Carlos, Chiner-Oms, Álvaro, Machado, Henrique, Veiga, Maria Isabel, Singh, Albel, Pereira, Rui, Amorim, António, Vieira, Jorge, Vieira, Cristina P., Bhatt, Apoorva, Rodrigues, Fernando, Rodrigues, Pedro N. S., Gagneux, Sebastien, Castro, António Gil, Guimarães, João Tiago, Bastos, Helder Novais, Osório, Nuno S., Comas, Iñaki, Saraiva, Margarida

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A standardised method for interpreting the association between mutations and phenotypic drug resistance in Mycobacterium tuberculosis von Miotto, Paolo, Tessema, Belay, Tagliani, Elisa, Chindelevitch, Leonid, Starks, Angela M, Emerson, Claudia, Hanna, Debra, Kim, Peter S, Liwski, Richard, Zignol, Matteo, Gilpin, Christopher, Niemann, Stefan, Denkinger, Claudia M, Fleming, Joy, Warren, Robin M, Crook, Derrick, Posey, James, Gagneux, Sebastien, Hoffner, Sven, Rodrigues, Camilla, Comas, Iñaki, Engelthaler, David M, Murray, Megan, Alland, David, Rigouts, Leen, Lange, Christoph, Dheda, Keertan, Hasan, Rumina, Ranganathan, Uma Devi K, McNerney, Ruth, Ezewudo, Matthew, Cirillo, Daniela M, Schito, Marco, Köser, Claudio U, Rodwell, Timothy C

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Variable Host-Pathogen Compatibility in Mycobacterium tuberculosis von Gagneux, Sebastien, DeRiemer, Kathryn, Van, Tran, Kato-Maeda, Midori, de Jong, Bouke C., Narayanan, Sujatha, Nicol, Mark, Niemann, Stefan, Kremer, Kristin, Gutierrez, M. Cristina, Hilty, Markus, Hopewell, Philip C., Small, Peter M.

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Interaction between host genes and Mycobacterium tuberculosis lineage can affect tuberculosis severity: Evidence for coevolution? von McHenry, Michael L, Bartlett, Jacquelaine, Igo, Jr, Robert P, Wampande, Eddie M, Benchek, Penelope, Mayanja-Kizza, Harriet, Fluegge, Kyle, Hall, Noemi B, Gagneux, Sebastien, Tishkoff, Sarah A, Wejse, Christian, Sirugo, Giorgio, Boom, W Henry, Joloba, Moses, Williams, Scott M, Stein, Catherine M

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Phylogenomics of Mycobacterium africanum reveals a new lineage and a complex evolutionary history von Coscolla, Mireia, Gagneux, Sebastien, Menardo, Fabrizio, Loiseau, Chloé, Ruiz-Rodriguez, Paula, Borrell, Sonia, Otchere, Isaac Darko, Asante-Poku, Adwoa, Asare, Prince, Sánchez-Busó, Leonor, Gehre, Florian, Sanoussi, C N'Dira, Antonio, Martin, Affolabi, Dissou, Fyfe, Janet, Beckert, Patrick, Niemann, Stefan, Alabi, Abraham S, Grobusch, Martin P, Kobbe, Robin, Parkhill, Julian, Beisel, Christian, Fenner, Lukas, Böttger, Erik C, Meehan, Conor J, Harris, Simon R, de Jong, Bouke C, Yeboah-Manu, Dorothy, Brites, Daniela

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Integrating standardized whole genome sequence analysis with a global Mycobacterium tuberculosis antibiotic resistance knowledgebase von Ezewudo, Matthew, Borens, Amanda, Chiner-Oms, Álvaro, Miotto, Paolo, Chindelevitch, Leonid, Starks, Angela M., Hanna, Debra, Liwski, Richard, Zignol, Matteo, Gilpin, Christopher, Niemann, Stefan, Kohl, Thomas Andreas, Warren, Robin M., Crook, Derrick, Gagneux, Sebastien, Hoffner, Sven, Rodrigues, Camilla, Comas, Iñaki, Engelthaler, David M., Alland, David, Rigouts, Leen, Lange, Christoph, Dheda, Keertan, Hasan, Rumina, McNerney, Ruth, Cirillo, Daniela M., Schito, Marco, Rodwell, Timothy C., Posey, James

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Effect of Mutation and Genetic Background on Drug Resistance in Mycobacterium tuberculosis von FENNER, Lukas, EGGER, Matthias, SIEGRIST, Hans H, FURRER, Hansjakob, CALMY, Alexandra, FEHR, Jan, STALDER, Jesica Mazza, NINET, Beatrice, BÖTTGER, Erik C, GAGNEUX, Sebastien, BODMER, Thomas, ALTPETER, Ekkehardt, ZWAHLEN, Marcel, JATON, Katia, PFYFFER, Gaby E, BORRELL, Sonia, DUBUIS, Olivier, BRUDERER, Thomas

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Spatio-Temporal Distribution of Mycobacterium tuberculosis Complex Strains in Ghana von Yeboah-Manu, Dorothy, Asare, P, Asante-Poku, A, Otchere, I D, Osei-Wusu, S, Danso, E, Forson, A, Koram, K A, Gagneux, Sebastien

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Clinical implications of molecular drug resistance testing for Mycobacterium tuberculosis: a 2023 TBnet/RESIST-TB consensus statement von Domínguez, José, Boeree, Martin J, Cambau, Emmanuelle, Chesov, Dumitru, Conradie, Francesca, Cox, Vivian, Dheda, Keertan, Dudnyk, Andrii, Farhat, Maha R, Gagneux, Sebastien, Grobusch, Martin P, Gröschel, Matthias I, Guglielmetti, Lorenzo, Kontsevaya, Irina, Lange, Berit, van Leth, Frank, Lienhardt, Christian, Mandalakas, Anna M, Maurer, Florian P, Merker, Matthias, Miotto, Paolo, Molina-Moya, Barbara, Morel, Florence, Niemann, Stefan, Veziris, Nicolas, Whitelaw, Andrew, Horsburgh, Charles R, Lange, Christoph, Domínguez, Jose, Boeree, Martin J., Cambau, Emmanuelle, Chesov, Dumitru, Conradie, Francesca, Cox, Vivian, Dheda, Keertan, Dudnyk, Andrii, Farhat, Maha R., Gagneux, Sebastien, Grobusch, Martin P., Gröschel, Matthias I., Guglielmetti, Lorenzo, Kontsevaya, Irina, Lange, Berit, van Leth, Frank, Lienhardt, Christian, Mandalakas, Anna Maria, Maurer, Florian, Merker, Matthias, Miotto, Paolo, Molina-Moya, Barbara, Morel, Florence, Niemann, Stefan, Veziris, Nicolas, Whitelaw, Andrew, Horsburgh, Charles Robert, Lange, Christoph

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Pathways and associated costs of care in patients with confirmed and presumptive tuberculosis in Tanzania: A cross-sectional study von Mhalu, Grace, Hella, Jerry, Mhimbira, Francis, Said, Khadija, Mosabi, Thomas, Mlacha, Yeromin P, Schindler, Christian, Gagneux, Sébastien, Reither, Klaus, de Hoogh, Kees, Weiss, Mitchell G, Zemp, Elisabeth, Fenner, Lukas

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Genomic Deletions Classify the Beijing/W Strains as a Distinct Genetic Lineage of Mycobacterium tuberculosis von Tsolaki, Anthony G, Gagneux, Sebastien, Pym, Alexander S, Goguet de la Salmoniere, Yves-Olivier L, Kreiswirth, Barry N, Van Soolingen, Dick, Small, Peter M

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Host-directed therapies for infectious diseases: current status, recent progress, and future prospects von Zumla, Alimuddin, Prof, Rao, Martin, PhD, Wallis, Robert S, Prof, Kaufmann, Stefan H E, Prof, Rustomjee, Roxana, PhD, Mwaba, Peter, PhD, Vilaplana, Cris, PhD, Yeboah-Manu, Dorothy, Prof, Chakaya, Jeremiah, PhD, Ippolito, Giuseppe, Prof, Azhar, Esam, PhD, Hoelscher, Michael, Prof, Maeurer, Markus, Prof

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An Outbreak of Serotype 1 Streptococcus pneumoniae Meningitis in Northern Ghana with Features That Are Characteristic of Neisseria meningitidis Meningitis Epidemics von Leimkugel, Julia, Adams Forgor, Abudulai, Gagneux, Sébastien, Pflüger, Valentin, Flierl, Christian, Awine, Elizabeth, Naegeli, Martin, Dangy, Jean-Pierre, Smith, Tom, Hodgson, Abraham, Pluschke, Gerd

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Genomic diversity among drug sensitive and multidrug resistant isolates of Mycobacterium tuberculosis with identical DNA fingerprints von Niemann, Stefan, Köser, Claudio U, Gagneux, Sebastien, Plinke, Claudia, Homolka, Susanne, Bignell, Helen, Carter, Richard J, Cheetham, R Keira, Cox, Anthony, Gormley, Niall A, Kokko-Gonzales, Paula, Murray, Lisa J, Rigatti, Roberto, Smith, Vincent P, Arends, Felix P M, Cox, Helen S, Smith, Geoff, Archer, John A C

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Genetic variability and consequence of Mycobacterium tuberculosis lineage 3 in Kampala-Uganda von Wampande, Eddie M, Naniima, Peter, Mupere, Ezekiel, Kateete, David P, Malone, LaShaunda L, Stein, Catherine M, Mayanja-Kizza, Harriet, Gagneux, Sebastien, Boom, W Henry, Joloba, Moses L

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Whole-Genome Sequencing Has the Potential To Improve Treatment for Rifampicin-Resistant Tuberculosis in High-Burden Settings: a Retrospective Cohort Study von Cox, Helen, Goig, Galo A, Salaam-Dreyer, Zubeida, Dippenaar, Anzaan, Reuter, Anja, Mohr-Holland, Erika, Daniels, Johnny, Cudahy, Patrick G T, Nicol, Mark P, Borrell, Sonia, Reinhard, Miriam, Doetsch, Anna, Beisel, Christian, Gagneux, Sebastien, Warren, Robin M, Furin, Jennifer

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The 2021 WHO catalogue of Mycobacterium tuberculosis complex mutations associated with drug resistance: a genotypic analysis von Walker, Timothy M, Köser, Claudio U, Knaggs, Jeff, Farhat, Maha R, Cirillo, Daniela Maria, Posey, James, Peto, Timothy EA, Uplekar, Swapna, Laurent, Sacha, Colman, Rebecca E, Nathanson, Carl-Michael, Walker, Ann Sarah, Rodwell, Timothy C, Lalvani, Ajit, Baulard, Alain, Christoffels, Alan, Mendoza-Ticona, Alberto, Trovato, Alberto, Lachapelle, Alexander S, Brankin, Alice, Koch, Anastasia, Brandao, Angela P, Chaiprasert, Angkana, Barbova, Anna, Bainomugisa, Arnold, Rodrigues, Camilla, Nimmo, Camus, Duncan, Carla, Coulter, Christopher, Utpatel, Christian, Liu, Chunfa, Grazian, Clara, Kong, Clare, Köser, Claudio U, Wilson, Daniel J, Jorgensen, Danielle, Crook, Derrick W, van Soolingen, Dick, Barreira, Draurio, Ngcamu, Dumisani, Kelly, Ellis, Roycroft, Emma, Böttger, Erik C, Menardo, Fabrizio, Mendes, Flavia F, Gao, George Fu, Thwaites, Guy, Albert, Heidi, Cox, Helen, Laurenson, Ian F, Barilar, Ivan, Robledo, Jaime, Gardy, Jennifer, Carter, Joshua, Kus, Julianne V, Todt, Katharina, Nilgiriwala, Kayzad S, Ghisi, Kelen T, Malone, Kerri M, Faksri, Kiatichai, Musser, Kimberlee A, Joseph, Lavania, Jarrett, Lisa, Grandjean, Louis, Schito, Marco, Wijkander, Maria, Rabodoarivelo, Marie-Sylvianne, Mihalic, Marina, Hunt, Martin, Egger, Matthias, Wu, Mei-Hua, Mansjö, Mikael, ISMAIL, Nazir, Rakotosamimanana, Niaina, Paton, Nicholas I, Miotto, Paolo, Lapierre, Pascal, Colman, Rebecca E, Wilkinson, Robert J, Diel, Roland, Oliveira, Rosangela S, Khot, Rukhsar, Tahseen, Sabira, Plesnik, Sara, Mitarai, Satoshi, Kohl, Thomas A, Thuong, Nguyen T T, Teo, Tik Ying, Rodwell, Timothy C, William, Timothy, Walker, Timothy M, Surve, Utkarsha, Vijay, Srinivasan, Escuyer, Vincent, Dreyer, Viola, Lin, Wan-Hsuan, van Gemert, Wayne, Yang, Yang, Zhao, Yanlin, Xiao, Yu-Xin

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