Optimization algorithm for the generation of ONCV pseudopotentials von Schlipf, Martin, Gygi, François

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The CASTOR Proteins Are Arginine Sensors for the mTORC1 Pathway von Chantranupong, Lynne, Scaria, Sonia M., Saxton, Robert A., Gygi, Melanie P., Shen, Kuang, Wyant, Gregory A., Wang, Tim, Harper, J. Wade, Gygi, Steven P., Sabatini, David M.

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Dual proteome-scale networks reveal cell-specific remodeling of the human interactome von Huttlin, Edward L., Bruckner, Raphael J., Navarrete-Perea, Jose, Cannon, Joe R., Baltier, Kurt, Gebreab, Fana, Gygi, Melanie P., Thornock, Alexandra, Zarraga, Gabriela, Tam, Stanley, Szpyt, John, Gassaway, Brandon M., Panov, Alexandra, Parzen, Hannah, Fu, Sipei, Golbazi, Arvene, Maenpaa, Eila, Stricker, Keegan, Guha Thakurta, Sanjukta, Zhang, Tian, Rad, Ramin, Pan, Joshua, Nusinow, David P., Paulo, Joao A., Schweppe, Devin K., Vaites, Laura Pontano, Harper, J. Wade, Gygi, Steven P.

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Architecture of the human interactome defines protein communities and disease networks von Huttlin, Edward L., Bruckner, Raphael J., Paulo, Joao A., Cannon, Joe R., Ting, Lily, Baltier, Kurt, Colby, Greg, Gebreab, Fana, Gygi, Melanie P., Parzen, Hannah, Szpyt, John, Tam, Stanley, Zarraga, Gabriela, Pontano-Vaites, Laura, Swarup, Sharan, White, Anne E., Schweppe, Devin K., Rad, Ramin, Erickson, Brian K., Obar, Robert A., Guruharsha, K. G., Li, Kejie, Artavanis-Tsakonas, Spyros, Gygi, Steven P., Harper, J. Wade

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The BioPlex Network: A Systematic Exploration of the Human Interactome von Huttlin, Edward L., Ting, Lily, Bruckner, Raphael J., Gebreab, Fana, Gygi, Melanie P., Szpyt, John, Tam, Stanley, Zarraga, Gabriela, Colby, Greg, Baltier, Kurt, Dong, Rui, Guarani, Virginia, Vaites, Laura Pontano, Ordureau, Alban, Rad, Ramin, Erickson, Brian K., Wühr, Martin, Chick, Joel, Zhai, Bo, Kolippakkam, Deepak, Mintseris, Julian, Obar, Robert A., Harris, Tim, Artavanis-Tsakonas, Spyros, Sowa, Mathew E., De Camilli, Pietro, Paulo, Joao A., Harper, J. Wade, Gygi, Steven P.

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All-Electron Plane-Wave Electronic Structure Calculations von Gygi, François

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The Energy Sensor AMP-activated Protein Kinase Directly Regulates the Mammalian FOXO3 Transcription Factor von Greer, Eric L., Oskoui, Philip R., Banko, Max R., Maniar, Jay M., Gygi, Melanie P., Gygi, Steven P., Brunet, Anne

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Web-Based Search Tool for Visualizing Instrument Performance Using the Triple Knockout (TKO) Proteome Standard von Gygi, Jeremy P, Yu, Qing, Navarrete-Perea, Jose, Rad, Ramin, Gygi, Steven P, Paulo, Joao A

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Systematic and Quantitative Assessment of the Ubiquitin-Modified Proteome von Kim, Woong, Bennett, Eric J., Huttlin, Edward L., Guo, Ailan, Li, Jing, Possemato, Anthony, Sowa, Mathew E., Rad, Ramin, Rush, John, Comb, Michael J., Harper, J. Wade, Gygi, Steven P.

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Strongly Anisotropic Dielectric Relaxation of Water at the Nanoscale von Zhang, Cui, Gygi, François, Galli, Giulia

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Angiogenin-Induced tRNA Fragments Inhibit Translation Initiation von Ivanov, Pavel, Emara, Mohamed M., Villen, Judit, Gygi, Steven P., Anderson, Paul

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Deep Proteomics of the Xenopus laevis Egg using an mRNA-Derived Reference Database von Wühr, Martin, Freeman, Robert M., Presler, Marc, Horb, Marko E., Peshkin, Leonid, Gygi, Steven P., Kirschner, Marc W.

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A Systematic Screen for CDK4/6 Substrates Links FOXM1 Phosphorylation to Senescence Suppression in Cancer Cells von Anders, Lars, Ke, Nan, Hydbring, Per, Choi, Yoon J., Widlund, Hans R., Chick, Joel M., Zhai, Huili, Vidal, Marc, Gygi, Stephen P., Braun, Pascal, Sicinski, Piotr

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mTOR inhibition activates overall protein degradation by the ubiquitin proteasome system as well as by autophagy von Zhao, Jinghui, Zhai, Bo, Gygi, Steven P., Goldberg, Alfred Lewis

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A Creatine-Driven Substrate Cycle Enhances Energy Expenditure and Thermogenesis in Beige Fat von Kazak, Lawrence, Chouchani, Edward T., Jedrychowski, Mark P., Erickson, Brian K., Shinoda, Kosaku, Cohen, Paul, Vetrivelan, Ramalingam, Lu, Gina Z., Laznik-Bogoslavski, Dina, Hasenfuss, Sebastian C., Kajimura, Shingo, Gygi, Steve P., Spiegelman, Bruce M.

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Target-Decoy Search Strategy for Mass Spectrometry-Based Proteomics von Elias, Joshua E., Gygi, Steven P.

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An iterative statistical approach to the identification of protein phosphorylation motifs from large-scale data sets von Schwartz, Daniel, Gygi, Steven P

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SR Proteins Function in Coupling RNAP II Transcription to Pre-mRNA Splicing von Das, Rita, Yu, Jiong, Zhang, Zuo, Gygi, Melanie P., Krainer, Adrian R., Gygi, Steven P., Reed, Robin

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Quantitative proteomics identifies NCOA4 as the cargo receptor mediating ferritinophagy von Mancias, Joseph D., Wang, Xiaoxu, Gygi, Steven P., Harper, J. Wade, Kimmelman, Alec C.

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Detection and Quantitation of Circulating Human Irisin by Tandem Mass Spectrometry von Jedrychowski, Mark P., Wrann, Christiane D., Paulo, Joao A., Gerber, Kaitlyn K., Szpyt, John, Robinson, Matthew M., Nair, K. Sreekumaran, Gygi, Steven P., Spiegelman, Bruce M.

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