Dynamic changes in intron retention are tightly associated with regulation of splicing factors and proliferative activity during B-cell development von Ullrich, Sebastian, Guigó, Roderic

Volltext

Genome annotation: From human genetics to biodiversity genomics von Guigó, Roderic

Volltext

Modelling and simulating generic RNA-Seq experiments with the flux simulator von Griebel, Thasso, Zacher, Benedikt, Ribeca, Paolo, Raineri, Emanuele, Lacroix, Vincent, Guigó, Roderic, Sammeth, Michael

Volltext

Modified penetrance of coding variants by cis-regulatory variation contributes to disease risk von Castel, Stephane E., Cervera, Alejandra, Mohammadi, Pejman, Aguet, François, Reverter, Ferran, Wolman, Aaron, Guigo, Roderic, Iossifov, Ivan, Vasileva, Ana, Lappalainen, Tuuli

Volltext

Landscape of transcription in human cells von Djebali, Sarah, Davis, Carrie A., Merkel, Angelika, Dobin, Alex, Lassmann, Timo, Mortazavi, Ali, Tanzer, Andrea, Lagarde, Julien, Lin, Wei, Schlesinger, Felix, Xue, Chenghai, Marinov, Georgi K., Khatun, Jainab, Williams, Brian A., Zaleski, Chris, Rozowsky, Joel, Röder, Maik, Kokocinski, Felix, Abdelhamid, Rehab F., Alioto, Tyler, Antoshechkin, Igor, Baer, Michael T., Bar, Nadav S., Batut, Philippe, Bell, Kimberly, Bell, Ian, Chakrabortty, Sudipto, Chen, Xian, Chrast, Jacqueline, Curado, Joao, Derrien, Thomas, Drenkow, Jorg, Dumais, Erica, Dumais, Jacqueline, Duttagupta, Radha, Falconnet, Emilie, Fastuca, Meagan, Fejes-Toth, Kata, Ferreira, Pedro, Foissac, Sylvain, Fullwood, Melissa J., Gao, Hui, Gonzalez, David, Gordon, Assaf, Gunawardena, Harsha, Howald, Cedric, Jha, Sonali, Johnson, Rory, Kapranov, Philipp, King, Brandon, Kingswood, Colin, Luo, Oscar J., Park, Eddie, Persaud, Kimberly, Preall, Jonathan B., Ribeca, Paolo, Risk, Brian, Robyr, Daniel, Sammeth, Michael, Schaffer, Lorian, See, Lei-Hoon, Shahab, Atif, Skancke, Jorgen, Suzuki, Ana Maria, Takahashi, Hazuki, Tilgner, Hagen, Trout, Diane, Walters, Nathalie, Wang, Huaien, Wrobel, John, Yu, Yanbao, Ruan, Xiaoan, Hayashizaki, Yoshihide, Harrow, Jennifer, Gerstein, Mark, Hubbard, Tim, Reymond, Alexandre, Antonarakis, Stylianos E., Hannon, Gregory, Giddings, Morgan C., Ruan, Yijun, Wold, Barbara, Carninci, Piero, Guigó, Roderic, Gingeras, Thomas R.

Volltext

Extensive error in the number of genes inferred from draft genome assemblies von Denton, James F, Lugo-Martinez, Jose, Tucker, Abraham E, Schrider, Daniel R, Warren, Wesley C, Hahn, Matthew W

Volltext

Whole-genome sequencing identifies recurrent mutations in chronic lymphocytic leukaemia von Puente, Xose S., Pinyol, Magda, Quesada, Víctor, Conde, Laura, Ordóñez, Gonzalo R., Villamor, Neus, Escaramis, Georgia, Jares, Pedro, Beà, Sílvia, González-Díaz, Marcos, Bassaganyas, Laia, Baumann, Tycho, Juan, Manel, López-Guerra, Mónica, Colomer, Dolors, Tubío, José M. C., López, Cristina, Navarro, Alba, Tornador, Cristian, Aymerich, Marta, Rozman, María, Hernández, Jesús M., Puente, Diana A., Freije, José M. P., Velasco, Gloria, Gutiérrez-Fernández, Ana, Costa, Dolors, Carrió, Anna, Guijarro, Sara, Enjuanes, Anna, Hernández, Lluís, Yagüe, Jordi, Nicolás, Pilar, Romeo-Casabona, Carlos M., Himmelbauer, Heinz, Castillo, Ester, Dohm, Juliane C., de Sanjosé, Silvia, Piris, Miguel A., de Alava, Enrique, Miguel, Jesús San, Royo, Romina, Gelpí, Josep L., Torrents, David, Orozco, Modesto, Pisano, David G., Valencia, Alfonso, Guigó, Roderic, Bayés, Mónica, Heath, Simon, Gut, Marta, Klatt, Peter, Marshall, John, Raine, Keiran, Stebbings, Lucy A., Futreal, P. Andrew, Stratton, Michael R., Campbell, Peter J., Gut, Ivo, López-Guillermo, Armando, Estivill, Xavier, Montserrat, Emili, López-Otín, Carlos, Campo, Elías

Volltext

Genome-wide profiling of the cardiac transcriptome after myocardial infarction identifies novel heart-specific long non-coding RNAs von Ounzain, Samir, Micheletti, Rudi, Beckmann, Tal, Schroen, Blanche, Alexanian, Michael, Pezzuto, Iole, Crippa, Stefania, Nemir, Mohamed, Sarre, Alexandre, Johnson, Rory, Dauvillier, Jérôme, Burdet, Frédéric, Ibberson, Mark, Guigó, Roderic, Xenarios, Ioannis, Heymans, Stephane, Pedrazzini, Thierry

Volltext

Transcriptome genetics using second generation sequencing in a Caucasian population von Montgomery, Stephen B, Dermitzakis, Emmanouil T, Sammeth, Micha, Gutierrez-Arcelus, Maria, Lach, Radoslaw P, Ingle, Catherine, Nisbett, James, Guigo, Roderic

Volltext

Defining functional DNA elements in the human genome von Kellis, Manolis, Wold, Barbara, Snyderd, Michael P., Bernstein, Bradley E., Kundaje, Anshul, Marinov, Georgi K., Ward, Lucas D., Birney, Ewan, Crawford, Gregory E., Dekker, Job, Dunham, Ian, Elnitski, Laura L., Farnham, Peggy J., Feingold, Elise A., Gerstein, Mark, Giddings, Morgan C., Gilbert, David M., Gingeras, Thomas R., Green, Eric D., Guigo, Roderic, Hubbard, Tim, Kent, Jim, Lieb, Jason D., Myerst, Richard M., Pazin, Michael J., Ren, Bing, Stamatoyannopoulos, John A., Weng, Zhiping, White, Kevin P., Hardison, Ross C.

Volltext

The RIDL hypothesis: transposable elements as functional domains of long noncoding RNAs von Johnson, Rory, Guigó, Roderic

Volltext

The European Genome-phenome Archive in 2021 von Freeberg, Mallory Ann, Fromont, Lauren A, D’Altri, Teresa, Romero, Anna Foix, Ciges, Jorge Izquierdo, Jene, Aina, Kerry, Giselle, Moldes, Mauricio, Ariosa, Roberto, Bahena, Silvia, Barrowdale, Daniel, Barbero, Marcos Casado, Fernandez-Orth, Dietmar, Garcia-Linares, Carles, Garcia-Rios, Emilio, Haziza, Frédéric, Juhasz, Bela, Llobet, Oscar Martinez, Milla, Gemma, Mohan, Anand, Rueda, Manuel, Sankar, Aravind, Shaju, Dona, Shimpi, Ashutosh, Singh, Babita, Thomas, Coline, de la Torre, Sabela, Uyan, Umuthan, Vasallo, Claudia, Flicek, Paul, Guigo, Roderic, Navarro, Arcadi, Parkinson, Helen, Keane, Thomas, Rambla, Jordi

Volltext

Functional Evolution of Clustered Aquaporin Genes Reveals Insights into the Oceanic Success of Teleost Eggs von Ferré, Alba, Chauvigné, François, Vlasova, Anna, Norberg, Birgitta, Bargelloni, Luca, Guigó, Roderic, Finn, Roderick Nigel, Cerdà, Joan

Volltext

Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx von Abascal, Federico, Corvelo, André, Cruz, Fernando, Villanueva-Cañas, José L, Vlasova, Anna, Marcet-Houben, Marina, Martínez-Cruz, Begoña, Cheng, Jade Yu, Prieto, Pablo, Quesada, Víctor, Quilez, Javier, Li, Gang, García, Francisca, Rubio-Camarillo, Miriam, Frias, Leonor, Ribeca, Paolo, Capella-Gutiérrez, Salvador, Rodríguez, José M, Câmara, Francisco, Lowy, Ernesto, Cozzuto, Luca, Erb, Ionas, Tress, Michael L, Rodriguez-Ales, Jose L, Ruiz-Orera, Jorge, Reverter, Ferran, Casas-Marce, Mireia, Soriano, Laura, Arango, Javier R, Derdak, Sophia, Galán, Beatriz, Blanc, Julie, Gut, Marta, Lorente-Galdos, Belen, Andrés-Nieto, Marta, López-Otín, Carlos, Valencia, Alfonso, Gut, Ivo, García, José L, Guigó, Roderic, Murphy, William J, Ruiz-Herrera, Aurora, Marques-Bonet, Tomas, Roma, Guglielmo, Notredame, Cedric, Mailund, Thomas, Albà, M Mar, Gabaldón, Toni, Alioto, Tyler, Godoy, José A

Volltext

Enhancers with tissue-specific activity are enriched in intronic regions von Borsari, Beatrice, Villegas-Miron, Pablo, Perez-Lluch, Silvia, Turpin, Isabel, Laayouni, Hafid, Segarra-Casas, Alba, Bertranpetit, Jaume, Guigo, Roderic, Acosta, Sandra

Volltext

Selenoprofiles: A Computational Pipeline for Annotation of Selenoproteins von Santesmasses, Didac, Mariotti, Marco, Guigó, Roderic

Volltext

The genomes of two key bumblebee species with primitive eusocial organization von Sadd, Ben M, Barribeau, Seth M, Bloch, Guy, de Graaf, Dirk C, Dearden, Peter, Elsik, Christine G, Gadau, Jürgen, Grimmelikhuijzen, Cornelis J P, Hasselmann, Martin, Lozier, Jeffrey D, Robertson, Hugh M, Smagghe, Guy, Stolle, Eckart, Van Vaerenbergh, Matthias, Waterhouse, Robert M, Bornberg-Bauer, Erich, Klasberg, Steffen, Bennett, Anna K, Câmara, Francisco, Guigó, Roderic, Hoff, Katharina, Mariotti, Marco, Munoz-Torres, Monica, Murphy, Terence, Santesmasses, Didac, Amdam, Gro V, Beckers, Matthew, Beye, Martin, Biewer, Matthias, Bitondi, Márcia M G, Blaxter, Mark L, Bourke, Andrew F G, Brown, Mark J F, Buechel, Severine D, Cameron, Rossanah, Cappelle, Kaat, Carolan, James C, Christiaens, Olivier, Ciborowski, Kate L, Clarke, David F, Colgan, Thomas J, Collins, David H, Cridge, Andrew G, Dalmay, Tamas, Dreier, Stephanie, du Plessis, Louis, Duncan, Elizabeth, Erler, Silvio, Evans, Jay, Falcon, Tiago, Flores, Kevin, Freitas, Flávia C P, Fuchikawa, Taro, Gempe, Tanja, Hartfelder, Klaus, Hauser, Frank, Helbing, Sophie, Humann, Fernanda C, Irvine, Frano, Jermiin, Lars S, Johnson, Claire E, Johnson, Reed M, Jones, Andrew K, Kadowaki, Tatsuhiko, Kidner, Jonathan H, Koch, Vasco, Köhler, Arian, Kraus, F Bernhard, Lattorff, H Michael G, Leask, Megan, Lockett, Gabrielle A, Mallon, Eamonn B, Antonio, David S Marco, Marxer, Monika, Meeus, Ivan, Moritz, Robin F A, Nair, Ajay, Näpflin, Kathrin, Nissen, Inga, Niu, Jinzhi, Nunes, Francis M F, Oakeshott, John G, Osborne, Amy, Otte, Marianne, Pinheiro, Daniel G, Rossié, Nina, Rueppell, Olav, Santos, Carolina G, Schmid-Hempel, Regula, Schmitt, Björn D, Schulte, Christina, Simões, Zilá L P, Soares, Michelle P M, Swevers, Luc, Winnebeck, Eva C, Wolschin, Florian, Yu, Na, Zdobnov, Evgeny M, Aqrawi, Peshtewani K, Blankenburg, Kerstin P

Volltext

Highly accessible AU-rich regions in 3' untranslated regions are hotspots for binding of regulatory factors von Plass, Mireya, Rasmussen, Simon H, Krogh, Anders

Volltext

Towards a complete map of the human long non-coding RNA transcriptome von Uszczynska-Ratajczak, Barbara, Lagarde, Julien, Frankish, Adam, Guigó, Roderic, Johnson, Rory

Volltext

Recent advances in functional genome analysis [version 1; peer review: 2 approved] von Guigo, Roderic, de Hoon, Michiel

Volltext