Defining and searching for structural motifs using DeepView/Swiss-PdbViewer von Johansson, Maria U, Zoete, Vincent, Michielin, Olivier, Guex, Nicolas

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Neutrophils and Snail Orchestrate the Establishment of a Pro-tumor Microenvironment in Lung Cancer von Faget, Julien, Groeneveld, Svenja, Boivin, Gael, Sankar, Martial, Zangger, Nadine, Garcia, Miguel, Guex, Nicolas, Zlobec, Inti, Steiner, Loïc, Piersigilli, Alessandra, Xenarios, Ioannis, Meylan, Etienne

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CTCF loss has limited effects on global genome architecture in Drosophila despite critical regulatory functions von Kaushal, Anjali, Mohana, Giriram, Dorier, Julien, Özdemir, Isa, Omer, Arina, Cousin, Pascal, Semenova, Anastasiia, Taschner, Michael, Dergai, Oleksandr, Marzetta, Flavia, Iseli, Christian, Eliaz, Yossi, Weisz, David, Shamim, Muhammad Saad, Guex, Nicolas, Lieberman Aiden, Erez, Gambetta, Maria Cristina

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Neighbor predation linked to natural competence fosters the transfer of large genomic regions in Vibrio cholerae von Matthey, Noémie, Stutzmann, Sandrine, Stoudmann, Candice, Guex, Nicolas, Iseli, Christian, Blokesch, Melanie

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A single-cell morpho-transcriptomic map of brassinosteroid action in the Arabidopsis root von Graeff, Moritz, Rana, Surbhi, Wendrich, Jos R., Dorier, Julien, Eekhout, Thomas, Aliaga Fandino, Ana Cecilia, Guex, Nicolas, Bassel, George W., De Rybel, Bert, Hardtke, Christian S.

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Genome-wide RNA polymerase II profiles and RNA accumulation reveal kinetics of transcription and associated epigenetic changes during diurnal cycles von Le Martelot, Gwendal, Canella, Donatella, Symul, Laura, Migliavacca, Eugenia, Gilardi, Federica, Liechti, Robin, Martin, Olivier, Harshman, Keith, Delorenzi, Mauro, Desvergne, Béatrice, Herr, Winship, Deplancke, Bart, Schibler, Ueli, Rougemont, Jacques, Guex, Nicolas, Hernandez, Nouria, Naef, Felix

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ShapeFinder: a software system for high-throughput quantitative analysis of nucleic acid reactivity information resolved by capillary electrophoresis von Vasa, Suzy M, Guex, Nicolas, Wilkinson, Kevin A, Weeks, Kevin M, Giddings, Morgan C

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Inhibition of anti-tumor immunity by melanoma cell-derived Activin-A depends on STING von Pinjusic, Katarina, Ambrosini, Giovanna, Lourenco, Joao, Fournier, Nadine, Iseli, Christian, Guex, Nicolas, Egorova, Olga, Nassiri, Sina, Constam, Daniel B

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High-throughput SHAPE analysis reveals structures in HIV-1 genomic RNA strongly conserved across distinct biological states von Wilkinson, Kevin A, Gorelick, Robert J, Vasa, Suzy M, Guex, Nicolas, Rein, Alan, Mathews, David H, Giddings, Morgan C, Weeks, Kevin M

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A systems genetics resource and analysis of sleep regulation in the mouse von Diessler, Shanaz, Jan, Maxime, Emmenegger, Yann, Guex, Nicolas, Middleton, Benita, Skene, Debra J, Ibberson, Mark, Burdet, Frederic, Götz, Lou, Pagni, Marco, Sankar, Martial, Liechti, Robin, Hor, Charlotte N, Xenarios, Ioannis, Franken, Paul

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Herpes simplex encephalitis due to a mutation in an E3 ubiquitin ligase von Bibert, Stéphanie, Quinodoz, Mathieu, Perriot, Sylvain, Krebs, Fanny S., Jan, Maxime, Malta, Rita C., Collinet, Emilie, Canales, Mathieu, Mathias, Amandine, Faignart, Nicole, Roulet-Perez, Eliane, Meylan, Pascal, Brouillet, René, Opota, Onya, Lozano-Calderon, Leyder, Fellmann, Florence, Guex, Nicolas, Zoete, Vincent, Asner, Sandra, Rivolta, Carlo, Du Pasquier, Renaud, Bochud, Pierre-Yves

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DBnorm as an R package for the comparison and selection of appropriate statistical methods for batch effect correction in metabolomic studies von Bararpour, Nasim, Gilardi, Federica, Carmeli, Cristian, Sidibe, Jonathan, Ivanisevic, Julijana, Caputo, Tiziana, Augsburger, Marc, Grabherr, Silke, Desvergne, Béatrice, Guex, Nicolas, Bochud, Murielle, Thomas, Aurelien

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Transcriptomic Signature Differences Between SARS-CoV-2 and Influenza Virus Infected Patients von Bibert, Stéphanie, Guex, Nicolas, Lourenco, Joao, Brahier, Thomas, Papadimitriou-Olivgeris, Matthaios, Damonti, Lauro, Manuel, Oriol, Liechti, Robin, Götz, Lou, Tschopp, Jonathan, Quinodoz, Mathieu, Vollenweider, Peter, Pagani, Jean-Luc, Oddo, Mauro, Hügli, Olivier, Lamoth, Frédéric, Erard, Véronique, Voide, Cathy, Delorenzi, Mauro, Rufer, Nathalie, Candotti, Fabio, Rivolta, Carlo, Boillat-Blanco, Noémie, Bochud, Pierre-Yves

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PPARβ interprets a chromatin signature of pluripotency to promote embryonic differentiation at gastrulation von Rotman, Nicolas, Guex, Nicolas, Gouranton, Erwan, Wahli, Walter

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Unsupervised Analysis of Flow Cytometry Data in a Clinical Setting Captures Cell Diversity and Allows Population Discovery von Baumgaertner, Petra, Sankar, Martial, Herrera, Fernanda, Benedetti, Fabrizio, Barras, David, Thierry, Anne-Christine, Dangaj, Denarda, Kandalaft, Lana E, Coukos, George, Xenarios, Ioannis, Guex, Nicolas, Harari, Alexandre

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Molecular insights into sex-specific metabolic alterations in Alzheimer's mouse brain using multi-omics approach von Strefeler, Abigail, Jan, Maxime, Quadroni, Manfredo, Teav, Tony, Rosenberg, Nadia, Chatton, Jean-Yves, Guex, Nicolas, Gallart-Ayala, Hector, Ivanisevic, Julijana

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Virosaurus A Reference to Explore and Capture Virus Genetic Diversity von Gleizes, Anne, Laubscher, Florian, Guex, Nicolas, Iseli, Christian, Junier, Thomas, Cordey, Samuel, Fellay, Jacques, Xenarios, Ioannis, Kaiser, Laurent, Mercier, Philippe Le

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Revisiting the specificity and ability of phospho-S129 antibodies to capture alpha-synuclein biochemical and pathological diversity von Lashuel, Hilal A., Mahul-Mellier, Anne-Laure, Novello, Salvatore, Hegde, Ramanath Narayana, Jasiqi, Yllza, Altay, Melek Firat, Donzelli, Sonia, DeGuire, Sean M., Burai, Ritwik, Magalhães, Pedro, Chiki, Anass, Ricci, Jonathan, Boussouf, Manel, Sadek, Ahmed, Stoops, Erik, Iseli, Christian, Guex, Nicolas

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Genome-wide analysis of SREBP1 activity around the clock reveals its combined dependency on nutrient and circadian signals von Gilardi, Federica, Migliavacca, Eugenia, Naldi, Aurélien, Baruchet, Michaël, Canella, Donatella, Le Martelot, Gwendal, Guex, Nicolas, Desvergne, Béatrice

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TIE-2 and VEGFR Kinase Activities Drive Immunosuppressive Function of TIE-2-Expressing Monocytes in Human Breast Tumors von IBBERSON, Mark, BRON, Sylvian, DOUCEY, Marie-Agnès, GUEX, Nicolas, FAES-VAN'T HULL, Eveline, IFTICENE-TREBOUX, Assia, HENRY, Luc, LEHR, Hans-Anton, DELALOYE, Jean-François, COUKOS, George, XENARIOS, Ioannis

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