Widespread Polycistronic Transcripts in Fungi Revealed by Single-Molecule mRNA Sequencing von Gordon, Sean P, Tseng, Elizabeth, Salamov, Asaf, Zhang, Jiwei, Meng, Xiandong, Zhao, Zhiying, Kang, Dongwan, Underwood, Jason, Grigoriev, Igor V, Figueroa, Melania, Schilling, Jonathan S, Chen, Feng, Wang, Zhong

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The genome portal of the Department of Energy Joint Genome Institute: 2014 updates von Nordberg, Henrik, Cantor, Michael, Dusheyko, Serge, Hua, Susan, Poliakov, Alexander, Shabalov, Igor, Smirnova, Tatyana, Grigoriev, Igor V, Dubchak, Inna

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PhycoCosm, a comparative algal genomics resource von Grigoriev, Igor V, Hayes, Richard D, Calhoun, Sara, Kamel, Bishoy, Wang, Alice, Ahrendt, Steven, Dusheyko, Sergey, Nikitin, Roman, Mondo, Stephen J, Salamov, Asaf, Shabalov, Igor, Kuo, Alan

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Genome-reconstruction for eukaryotes from complex natural microbial communities von West, Patrick T, Probst, Alexander J, Grigoriev, Igor V, Thomas, Brian C, Banfield, Jillian F

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Evolution and comparative genomics of the most common Trichoderma species von Kubicek, Christian P, Steindorff, Andrei S, Chenthamara, Komal, Manganiello, Gelsomina, Henrissat, Bernard, Zhang, Jian, Cai, Feng, Kopchinskiy, Alexey G, Kubicek, Eva M, Kuo, Alan, Baroncelli, Riccardo, Sarrocco, Sabrina, Noronha, Eliane Ferreira, Vannacci, Giovanni, Shen, Qirong, Grigoriev, Igor V, Druzhinina, Irina S

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High intraspecific genome diversity in the model arbuscular mycorrhizal symbiont Rhizophagus irregularis von Chen, Eric C. H., Morin, Emmanuelle, Beaudet, Denis, Noel, Jessica, Yildirir, Gokalp, Ndikumana, Steve, Charron, Philippe, St‐Onge, Camille, Giorgi, John, Krüger, Manuela, Marton, Timea, Ropars, Jeanne, Grigoriev, Igor V., Hainaut, Matthieu, Henrissat, Bernard, Roux, Christophe, Martin, Francis, Corradi, Nicolas

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Transposable Elements versus the Fungal Genome: Impact on Whole-Genome Architecture and Transcriptional Profiles von Castanera, Raúl, López-Varas, Leticia, Borgognone, Alessandra, LaButti, Kurt, Lapidus, Alla, Schmutz, Jeremy, Grimwood, Jane, Pérez, Gúmer, Pisabarro, Antonio G, Grigoriev, Igor V, Stajich, Jason E, Ramírez, Lucía

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FunGAP: Fungal Genome Annotation Pipeline using evidence-based gene model evaluation von Min, Byoungnam, Grigoriev, Igor V, Choi, In-Geol

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Trichoderma : the genomics of opportunistic success von Kubicek, Christian P, Druzhinina, Irina S, Seidl-Seiboth, Verena, Herrera-Estrella, Alfredo, Horwitz, Benjamin A, Kenerley, Charles M, Monte, Enrique, Mukherjee, Prasun K, Zeilinger, Susanne, Grigoriev, Igor V

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Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi von Riley, Robert, Salamov, Asaf A., Brown, Daren W., Nagy, Laszlo G., Floudas, Dimitrios, Held, Benjamin W., Levasseur, Anthony, Lombard, Vincent, Morin, Emmanuelle, Otillar, Robert, Lindquist, Erika A., Sun, Hui, LaButti, Kurt M., Schmutz, Jeremy, Jabbour, Dina, Luoi, Hong, Baker, Scott E., Pisabarro, Antonio G., Walton, Jonathan D., Blanchette, Robert A., Henrissat, Bernard, Martin, Francis, Cullen, Dan, Hibbett, David S., Grigoriev, Igor V.

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Comparative genomics of Rhizophagus irregularis, R. cerebriforme, R. diaphanus and Gigaspora rosea highlights specific genetic features in Glomeromycotina von Morin, Emmanuelle, Miyauchi, Shingo, San Clemente, Hélène, Chen, Eric C. H., Pelin, Adrian, de la Providencia, Ivan, Ndikumana, Steve, Beaudet, Denis, Hainaut, Mathieu, Drula, Elodie, Kuo, Alan, Tang, Nianwu, Roy, Sébastien, Viala, Julie, Henrissat, Bernard, Grigoriev, Igor V., Corradi, Nicolas, Roux, Christophe, Martin, Francis M.

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Early Diverging Fungus Mucor circinelloides Lacks Centromeric Histone CENP-A and Displays a Mosaic of Point and Regional Centromeres von Navarro-Mendoza, María Isabel, Pérez-Arques, Carlos, Panchal, Shweta, Nicolás, Francisco E., Mondo, Stephen J., Ganguly, Promit, Pangilinan, Jasmyn, Grigoriev, Igor V., Heitman, Joseph, Sanyal, Kaustuv, Garre, Victoriano

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Genetic determinants of endophytism in the Arabidopsis root mycobiome von Mesny, Fantin, Miyauchi, Shingo, Thiergart, Thorsten, Pickel, Brigitte, Atanasova, Lea, Karlsson, Magnus, Hüttel, Bruno, Barry, Kerrie W., Haridas, Sajeet, Chen, Cindy, Bauer, Diane, Andreopoulos, William, Pangilinan, Jasmyn, LaButti, Kurt, Riley, Robert, Lipzen, Anna, Clum, Alicia, Drula, Elodie, Henrissat, Bernard, Kohler, Annegret, Grigoriev, Igor V., Martin, Francis M., Hacquard, Stéphane

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Evolutionary history of arbuscular mycorrhizal fungi and genomic signatures of obligate symbiosis von Rosling, Anna, Eshghi Sahraei, Shadi, Kalsoom Khan, Faheema, Desirò, Alessandro, Bryson, Abigail E, Mondo, Stephen J, Grigoriev, Igor V, Bonito, Gregory, Sánchez-García, Marisol

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Early-branching gut fungi possess a large, comprehensive array of biomass-degrading enzymes von Solomon, Kevin V., Haitjema, Charles H., Henske, John K., Gilmore, Sean P., Borges-Rivera, Diego, Lipzen, Anna, Brewer, Heather M., Purvine, Samuel O., Wright, Aaron T., Theodorou, Michael K., Grigoriev, Igor V., Regev, Aviv, Thompson, Dawn A., O'Malley, Michelle A.

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Single-cell RNA sequencing reveals intrinsic and extrinsic regulatory heterogeneity in yeast responding to stress von Gasch, Audrey P, Yu, Feiqiao Brian, Hose, James, Escalante, Leah E, Place, Mike, Bacher, Rhonda, Kanbar, Jad, Ciobanu, Doina, Sandor, Laura, Grigoriev, Igor V, Kendziorski, Christina, Quake, Stephen R, McClean, Megan N

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Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts von Druzhinina, Irina S, Chenthamara, Komal, Zhang, Jian, Atanasova, Lea, Yang, Dongqing, Miao, Youzhi, Rahimi, Mohammad J, Grujic, Marica, Cai, Feng, Pourmehdi, Shadi, Salim, Kamariah Abu, Pretzer, Carina, Kopchinskiy, Alexey G, Henrissat, Bernard, Kuo, Alan, Hundley, Hope, Wang, Mei, Aerts, Andrea, Salamov, Asaf, Lipzen, Anna, LaButti, Kurt, Barry, Kerrie, Grigoriev, Igor V, Shen, Qirong, Kubicek, Christian P

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Comparative genomics provides insights into the lifestyle and reveals functional heterogeneity of dark septate endophytic fungi von Knapp, Dániel G., Németh, Julianna B., Barry, Kerrie, Hainaut, Matthieu, Henrissat, Bernard, Johnson, Jenifer, Kuo, Alan, Lim, Joanne Hui Ping, Lipzen, Anna, Nolan, Matt, Ohm, Robin A., Tamás, László, Grigoriev, Igor V., Spatafora, Joseph W., Nagy, László G., Kovács, Gábor M.

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Phylogenomics of Endogonaceae and evolution of mycorrhizas within Mucoromycota von Chang, Ying, Desirò, Alessandro, Na, Hyunsoo, Sandor, Laura, Lipzen, Anna, Clum, Alicia, Barry, Kerrie, Grigoriev, Igor V., Martin, Francis M., Stajich, Jason E., Smith, Matthew E., Bonito, Gregory, Spatafora, Joseph W.

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Genetic isolation between two recently diverged populations of a symbiotic fungus von Branco, Sara, Gladieux, Pierre, Ellison, Christopher E., Kuo, Alan, LaButti, Kurt, Lipzen, Anna, Grigoriev, Igor V., Liao, Hui-Ling, Vilgalys, Rytas, Peay, Kabir G., Taylor, John W., Bruns, Thomas D.

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