GenVisR: Genomic Visualizations in R von Skidmore, Zachary L, Wagner, Alex H, Lesurf, Robert, Campbell, Katie M, Kunisaki, Jason, Griffith, Obi L, Griffith, Malachi

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Best practices for bioinformatic characterization of neoantigens for clinical utility von Richters, Megan M, Xia, Huiming, Campbell, Katie M, Gillanders, William E, Griffith, Obi L, Griffith, Malachi

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NeoPalAna: Neoadjuvant Palbociclib, a Cyclin-Dependent Kinase 4/6 Inhibitor, and Anastrozole for Clinical Stage 2 or 3 Estrogen Receptor-Positive Breast Cancer von Ma, Cynthia X, Gao, Feng, Luo, Jingqin, Northfelt, Donald W, Goetz, Matthew, Forero, Andres, Hoog, Jeremy, Naughton, Michael, Ademuyiwa, Foluso, Suresh, Rama, Anderson, Karen S, Margenthaler, Julie, Aft, Rebecca, Hobday, Timothy, Moynihan, Timothy, Gillanders, William, Cyr, Amy, Eberlein, Timothy J, Hieken, Tina, Krontiras, Helen, Guo, Zhanfang, Lee, Michelle V, Spies, Nicholas C, Skidmore, Zachary L, Griffith, Obi L, Griffith, Malachi, Thomas, Shana, Bumb, Caroline, Vij, Kiran, Bartlett, Cynthia Huang, Koehler, Maria, Al-Kateb, Hussam, Sanati, Souzan, Ellis, Matthew J

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Single-agent ibrutinib in relapsed or refractory follicular lymphoma: a phase 2 consortium trial von Bartlett, Nancy L., Costello, Brian A., LaPlant, Betsy R., Ansell, Stephen M., Kuruvilla, John G., Reeder, Craig B., Thye, Lim S., Anderson, Daniel M., Krysiak, Kilannin, Ramirez, Cody, Qi, Jing, Siegel, Barry A., Griffith, Malachi, Griffith, Obi L., Gomez, Felicia, Fehniger, Todd A.

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Recurrent somatic mutations affecting B-cell receptor signaling pathway genes in follicular lymphoma von Krysiak, Kilannin, Gomez, Felicia, White, Brian S., Matlock, Matthew, Miller, Christopher A., Trani, Lee, Fronick, Catrina C., Fulton, Robert S., Kreisel, Friederike, Cashen, Amanda F., Carson, Kenneth R., Berrien-Elliott, Melissa M., Bartlett, Nancy L., Griffith, Malachi, Griffith, Obi L., Fehniger, Todd A.

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SciClone: inferring clonal architecture and tracking the spatial and temporal patterns of tumor evolution von Miller, Christopher A, White, Brian S, Dees, Nathan D, Griffith, Malachi, Welch, John S, Griffith, Obi L, Vij, Ravi, Tomasson, Michael H, Graubert, Timothy A, Walter, Matthew J, Ellis, Matthew J, Schierding, William, DiPersio, John F, Ley, Timothy J, Mardis, Elaine R, Wilson, Richard K, Ding, Li

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Genomic Landscape of Non-Small Cell Lung Cancer in Smokers and Never-Smokers von Govindan, Ramaswamy, Ding, Li, Griffith, Malachi, Subramanian, Janakiraman, Dees, Nathan D., Kanchi, Krishna L., Maher, Christopher A., Fulton, Robert, Fulton, Lucinda, Wallis, John, Chen, Ken, Walker, Jason, McDonald, Sandra, Bose, Ron, Ornitz, David, Xiong, Donghai, You, Ming, Dooling, David J., Watson, Mark, Mardis, Elaine R., Wilson, Richard K.

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Integrated analysis of genomic and transcriptomic data for the discovery of splice-associated variants in cancer von Cotto, Kelsy C., Feng, Yang-Yang, Ramu, Avinash, Richters, Megan, Freshour, Sharon L., Skidmore, Zachary L., Xia, Huiming, McMichael, Joshua F., Kunisaki, Jason, Campbell, Katie M., Chen, Timothy Hung-Po, Rozycki, Emily B., Adkins, Douglas, Devarakonda, Siddhartha, Sankararaman, Sumithra, Lin, Yiing, Chapman, William C., Maher, Christopher A., Arora, Vivek, Dunn, Gavin P., Uppaluri, Ravindra, Govindan, Ramaswamy, Griffith, Obi L., Griffith, Malachi

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Wikidata as a knowledge graph for the life sciences von Waagmeester, Andra, Stupp, Gregory, Burgstaller-Muehlbacher, Sebastian, Good, Benjamin M, Griffith, Malachi, Griffith, Obi L, Hanspers, Kristina, Hermjakob, Henning, Hudson, Toby S, Hybiske, Kevin, Keating, Sarah M, Manske, Magnus, Mayers, Michael, Mietchen, Daniel, Mitraka, Elvira, Pico, Alexander R, Putman, Timothy, Riutta, Anders, Queralt-Rosinach, Nuria, Schriml, Lynn M, Shafee, Thomas, Slenter, Denise, Stephan, Ralf, Thornton, Katherine, Tsueng, Ginger, Tu, Roger, Ul-Hasan, Sabah, Willighagen, Egon, Wu, Chunlei, Su, Andrew I

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pVACtools: A Computational Toolkit to Identify and Visualize Cancer Neoantigens von Hundal, Jasreet, Kiwala, Susanna, McMichael, Joshua, Miller, Christopher A, Xia, Huiming, Wollam, Alexander T, Liu, Connor J, Zhao, Sidi, Feng, Yang-Yang, Graubert, Aaron P, Wollam, Amber Z, Neichin, Jonas, Neveau, Megan, Walker, Jason, Gillanders, William E, Mardis, Elaine R, Griffith, Obi L, Griffith, Malachi

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Functional Heterogeneity of Genetically Defined Subclones in Acute Myeloid Leukemia von Klco, Jeffery M., Spencer, David H., Miller, Christopher A., Griffith, Malachi, Lamprecht, Tamara L., O’Laughlin, Michelle, Fronick, Catrina, Magrini, Vincent, Demeter, Ryan T., Fulton, Robert S., Eades, William C., Link, Daniel C., Graubert, Timothy A., Walter, Matthew J., Mardis, Elaine R., Dipersio, John F., Wilson, Richard K., Ley, Timothy J.

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DoCM: a database of curated mutations in cancer von Ainscough, Benjamin J, Griffith, Malachi, Coffman, Adam C, Wagner, Alex H, Kunisaki, Jason, Choudhary, Mayank NK, McMichael, Joshua F, Fulton, Robert S, Wilson, Richard K, Griffith, Obi L, Mardis, Elaine R

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Informatics for RNA Sequencing: A Web Resource for Analysis on the Cloud von Griffith, Malachi, Walker, Jason R, Spies, Nicholas C, Ainscough, Benjamin J, Griffith, Obi L

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Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells von Morin, Ryan D, O'Connor, Michael D, Griffith, Malachi, Kuchenbauer, Florian, Delaney, Allen, Prabhu, Anna-Liisa, Zhao, Yongjun, McDonald, Helen, Zeng, Thomas, Hirst, Martin, Eaves, Connie J, Marra, Marco A

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Accounting for proximal variants improves neoantigen prediction von Hundal, Jasreet, Kiwala, Susanna, Feng, Yang-Yang, Liu, Connor J., Govindan, Ramaswamy, Chapman, William C., Uppaluri, Ravindra, Swamidass, S. Joshua, Griffith, Obi L., Mardis, Elaine R., Griffith, Malachi

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A macrophage-cell model of HIV latency reveals the unusual importance of the bromodomain axis von Kisaka, Javan K, Rauch, Daniel, Griffith, Malachi, Kyei, George B

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DGIdb 3.0: a redesign and expansion of the drug–gene interaction database von Cotto, Kelsy C, Wagner, Alex H, Feng, Yang-Yang, Kiwala, Susanna, Coffman, Adam C, Spies, Gregory, Wollam, Alex, Spies, Nicholas C, Griffith, Obi L, Griffith, Malachi

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Unraveling the chaotic genomic landscape of primary and metastatic canine appendicular osteosarcoma with current sequencing technologies and bioinformatic approaches von Chu, Shirley, Skidmore, Zachary L, Kunisaki, Jason, Walker, Jason R, Griffith, Malachi, Griffith, Obi L, Bryan, Jeffrey N

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A Phase II Trial of Neoadjuvant MK-2206, an AKT Inhibitor, with Anastrozole in Clinical Stage II or III PIK3CA -Mutant ER-Positive and HER2-Negative Breast Cancer von Ma, Cynthia X, Suman, Vera, Goetz, Matthew P, Northfelt, Donald, Burkard, Mark E, Ademuyiwa, Foluso, Naughton, Michael, Margenthaler, Julie, Aft, Rebecca, Gray, Richard, Tevaarwerk, Amye, Wilke, Lee, Haddad, Tufia, Moynihan, Timothy, Loprinzi, Charles, Hieken, Tina, Barnell, Erica K, Skidmore, Zachary L, Feng, Yan-Yang, Krysiak, Kilannin, Hoog, Jeremy, Guo, Zhanfang, Nehring, Leslie, Wisinski, Kari B, Mardis, Elaine, Hagemann, Ian S, Vij, Kiran, Sanati, Souzan, Al-Kateb, Hussam, Griffith, Obi L, Griffith, Malachi, Doyle, Laurence, Erlichman, Charles, Ellis, Matthew J

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Yap1 Mediates Trametinib Resistance in Head and Neck Squamous Cell Carcinomas von Mudianto, Tenny, Campbell, Katie M, Webb, Jason, Zolkind, Paul, Skidmore, Zachary L, Riley, Rachel, Barnell, Erica K, Ozgenc, Ibrahim, Giri, Tusar, Dunn, Gavin P, Adkins, Douglas R, Griffith, Malachi, Egloff, Ann Marie, Griffith, Obi L, Uppaluri, Ravindra

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