Molecular specificity, convergence and constraint shape adaptive evolution in nutrient-poor environments von Hong, Jungeui, Gresham, David

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Incorporation of unique molecular identifiers in TruSeq adapters improves the accuracy of quantitative sequencing von Hong, Jungeui, Gresham, David

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Transcription-induced formation of extrachromosomal DNA during yeast ageing von Hull, Ryan M, King, Michelle, Pizza, Grazia, Krueger, Felix, Vergara, Xabier, Houseley, Jonathan

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Determination of in vivo RNA kinetics using RATE-seq von Neymotin, Benjamin, Athanasiadou, Rodoniki, Gresham, David

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Neural networks enable efficient and accurate simulation-based inference of evolutionary parameters from adaptation dynamics von Avecilla, Grace, Chuong, Julie N, Li, Fangfei, Sherlock, Gavin, Gresham, David, Ram, Yoav

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Genetic interaction profiles of regulatory kinases differ between environmental conditions and cellular states von Sun, Siyu, Baryshnikova, Anastasia, Brandt, Nathan, Gresham, David

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Gene regulatory network reconstruction using single-cell RNA sequencing of barcoded genotypes in diverse environments von Jackson, Christopher A, Castro, Dayanne M, Saldi, Giuseppe-Antonio, Bonneau, Richard, Gresham, David

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Single-cell copy number variant detection reveals the dynamics and diversity of adaptation von Lauer, Stephanie, Avecilla, Grace, Spealman, Pieter, Sethia, Gunjan, Brandt, Nathan, Levy, Sasha F, Gresham, David

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A Bright IDEA von Jackson, Christopher, Gresham, David

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Influenza A virus reassortment is strain dependent von Taylor, Kishana Y, Agu, Ilechukwu, José, Ivy, Mäntynen, Sari, Campbell, A J, Mattson, Courtney, Chou, Tsui-Wen, Zhou, Bin, Gresham, David, Ghedin, Elodie, Díaz Muñoz, Samuel L

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Systematic identification of factors mediating accelerated mRNA degradation in response to changes in environmental nitrogen von Miller, Darach, Brandt, Nathan, Gresham, David

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Comparing whole genomes using DNA microarrays von Gresham, David, Dunham, Maitreya J, Botstein, David

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Coordination of growth rate, cell cycle, stress response, and metabolic activity in yeast von Brauer, Matthew J, Huttenhower, Curtis, Airoldi, Edoardo M, Rosenstein, Rachel, Matese, John C, Gresham, David, Boer, Viktor M, Troyanskaya, Olga G, Botstein, David

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Genetic and nongenetic determinants of cell growth variation assessed by high-throughput microscopy von Ziv, Naomi, Siegal, Mark L, Gresham, David

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Adaptation to diverse nitrogen-limited environments by deletion or extrachromosomal element formation of the GAP1 locus von Gresham, David, Usaite, Renata, Germann, Susanne Manuela, Lisby, Michael, Botstein, David, Regenberg, Birgitte

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Structure-primed embedding on the transcription factor manifold enables transparent model architectures for gene regulatory network and latent activity inference von Tjärnberg, Andreas, Beheler-Amass, Maggie, Jackson, Christopher A, Christiaen, Lionel A, Gresham, David, Bonneau, Richard

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A sticky solution von Gresham, David

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De-novo learning of genome-scale regulatory networks in S. cerevisiae von Ma, Sisi, Kemmeren, Patrick, Gresham, David, Statnikov, Alexander

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Rapid evolution of recombinant Saccharomyces cerevisiae for Xylose fermentation through formation of extra-chromosomal circular DNA von Demeke, Mekonnen M, Foulquié-Moreno, María R, Dumortier, Françoise, Thevelein, Johan M

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Patient subtyping analysis of baseline multi-omic data reveals distinct pre-immune states associated with antibody response to seasonal influenza vaccination von Sevim Bayrak, Cigdem, Forst, Christian V., Jones, Drew R., Gresham, David J., Pushalkar, Smruti, Wu, Shaohuan, Vogel, Christine, Mahal, Lara K., Ghedin, Elodie, Ross, Ted, García-Sastre, Adolfo, Zhang, Bin

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