Ancient gene linkages support ctenophores as sister to other animals von Schultz, Darrin T., Haddock, Steven H. D., Bredeson, Jessen V., Green, Richard E., Simakov, Oleg, Rokhsar, Daniel S.

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Chromosome-scale shotgun assembly using an in vitro method for long-range linkage von Putnam, Nicholas H, O'Connell, Brendan L, Stites, Jonathan C, Rice, Brandon J, Blanchette, Marco, Calef, Robert, Troll, Christopher J, Fields, Andrew, Hartley, Paul D, Sugnet, Charles W, Haussler, David, Rokhsar, Daniel S, Green, Richard E

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Minimizing polymerase biases in metabarcoding von Nichols, Ruth V., Vollmers, Christopher, Newsom, Lee A., Wang, Yue, Heintzman, Peter D., Leighton, McKenna, Green, Richard E., Shapiro, Beth

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New Approaches for Genome Assembly and Scaffolding von Rice, Edward S, Green, Richard E

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Epigenetic maintenance of topological domains in the highly rearranged gibbon genome von Lazar, Nathan H, Nevonen, Kimberly A, O'Connell, Brendan, McCann, Christine, O'Neill, Rachel J, Green, Richard E, Meyer, Thomas J, Okhovat, Mariam, Carbone, Lucia

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Genomic evidence for island population conversion resolves conflicting theories of polar bear evolution von Cahill, James A, Green, Richard E, Fulton, Tara L, Stiller, Mathias, Jay, Flora, Ovsyanikov, Nikita, Salamzade, Rauf, St John, John, Stirling, Ian, Slatkin, Montgomery, Shapiro, Beth

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Deeply conserved synteny resolves early events in vertebrate evolution von Simakov, Oleg, Marlétaz, Ferdinand, Yue, Jia-Xing, O’Connell, Brendan, Jenkins, Jerry, Brandt, Alexander, Calef, Robert, Tung, Che-Huang, Huang, Tzu-Kai, Schmutz, Jeremy, Satoh, Nori, Yu, Jr-Kai, Putnam, Nicholas H., Green, Richard E., Rokhsar, Daniel S.

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A ligation-based single-stranded library preparation method to analyze cell-free DNA and synthetic oligos von Troll, Christopher J, Kapp, Joshua, Rao, Varsha, Harkins, Kelly M, Cole, Charles, Naughton, Colin, Morgan, Jessica M, Shapiro, Beth, Green, Richard E

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Genomic analysis of 6,000-year-old cultivated grain illuminates the domestication history of barley von Mascher, Martin, Schuenemann, Verena J, Davidovich, Uri, Marom, Nimrod, Himmelbach, Axel, Hübner, Sariel, Korol, Abraham, David, Michal, Reiter, Ella, Riehl, Simone, Schreiber, Mona, Vohr, Samuel H, Green, Richard E, Dawson, Ian K, Russell, Joanne, Kilian, Benjamin, Muehlbauer, Gary J, Waugh, Robbie, Fahima, Tzion, Krause, Johannes, Weiss, Ehud, Stein, Nils

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Deeply conserved synteny and the evolution of metazoan chromosomes von Simakov, Oleg, Bredeson, Jessen, Berkoff, Kodiak, Marletaz, Ferdinand, Mitros, Therese, Schultz, Darrin T, O'Connell, Brendan L, Dear, Paul, Martinez, Daniel E, Steele, Robert E, Green, Richard E, David, Charles N, Rokhsar, Daniel S

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Patterns of Damage in Genomic DNA Sequences from a Neandertal von Briggs, Adrian W., Stenzel, Udo, Johnson, Philip L. F., Green, Richard E., Kelso, Janet, Prüfer, Kay, Meyer, Matthias, Krause, Johannes, Ronan, Michael T., Lachmann, Michael, Pääbo, Svante

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Stable C and N isotope analysis of hair suggest undernourishment as a factor in the death of a mummified girl from late 19th century San Francisco, CA von Eerkens, Jelmer W, Hull, Bryna, Goodman, Jena, Evoy, Angela, Kapp, Joshua D, Hussain, Sidra, Green, Richard E

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Evolutionary history and adaptation of a human pygmy population of Flores Island, Indonesia von Tucci, Serena, Vohr, Samuel H, McCoy, Rajiv C, Vernot, Benjamin, Robinson, Matthew R, Barbieri, Chiara, Nelson, Brad J, Fu, Wenqing, Purnomo, Gludhug A, Sudoyo, Herawati, Eichler, Evan E, Barbujani, Guido, Visscher, Peter M, Akey, Joshua M, Green, Richard E

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One fly–one genome: chromosome-scale genome assembly of a single outbred Drosophila melanogaster von Adams, Matthew, McBroome, Jakob, Maurer, Nicholas, Pepper-Tunick, Evan, Saremi, Nedda F, Green, Richard E, Vollmers, Christopher, Corbett-Detig, Russell B

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Targeted Retrieval and Analysis of Five Neandertal mtDNA Genomes von Briggs, Adrian W, Good, Jeffrey M, Green, Richard E, Krause, Johannes, Maricic, Tomislav, Stenzel, Udo, Lalueza-Fox, Carles, Rudan, Pavao, Brajković, Dejana, Kućan, Željko, Gušić, Ivan, Schmitz, Ralf, Doronichev, Vladimir B, Golovanova, Liubov V, de la Rasilla, Marco, Fortea, Javier, Rosas, Antonio, Pääbo, Svante

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Transoceanic drift and the domestication of African bottle gourds in the Americas von Kistler, Logan, Montenegro, Álvaro, Smith, Bruce D., Gifford, John A., Green, Richard E., Newsom, Lee A., Shapiro, Beth

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Analysis of one million base pairs of Neanderthal DNA von Ronan, Michael T, Egholm, Michael, Paunovic, Maja, Pääbo, Svante, Green, Richard E, Ptak, Susan E, Rothberg, Jonathan M, Briggs, Adrian W, Simons, Jan F, Krause, Johannes, Du, Lei

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Genomic DNA sequences from mastodon and woolly mammoth reveal deep speciation of forest and savanna elephants von Rohland, Nadin, Reich, David, Mallick, Swapan, Meyer, Matthias, Green, Richard E, Georgiadis, Nicholas J, Roca, Alfred L, Hofreiter, Michael

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Human Evolution: Turning Back the Clock von Green, Richard E., Shapiro, Beth

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Evidence for the Widespread Coupling of Alternative Splicing and Nonsense-Mediated mRNA Decay in Humans von Lewis, Benjamin P., Green, Richard E., Brenner, Steven E.

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